Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0817
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 78 1e-15
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 30 0.29
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 28 1.2
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 27 1.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 1.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 26 4.7
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.2
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 25 6.2
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 25 8.3
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.3
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 8.3
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 25 8.3
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 77.8 bits (183), Expect = 1e-15
Identities = 32/62 (51%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = +1
Query: 82 SMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCN 255
S P G+F+++++KRVYSN+D + ++P+F+E FDPENYS+W +Y YPE+L + VFM+ N
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNN 316
Query: 256 LL 261
L+
Sbjct: 317 LI 318
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 LITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FPLSSDWQVDYESYD 428
LI G FQRL+ RK F + GE+ ++TI+G +V +G + V F ++ DW SY
Sbjct: 317 LIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDW----GSYT 372
Query: 429 WKKLDPSSEETKKLVQDYFSWNGTDKEVE 515
+ KLD + E K ++D ++W DK +E
Sbjct: 373 FTKLDINKPEDKAFIEDAWAW---DKPIE 398
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 29.9 bits (64), Expect = 0.29
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 345 WWNCCL-HQTGRRMRKPVCAFCLTSGTYP**VTAHEHFSEFLGVFVFSIPNGIVLG 181
WWNC Q R KPV F L P + S F FV S+ + +V+G
Sbjct: 359 WWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMG 414
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 456 ETKKLVQDYFSWNGTDKEVESSTRARYSSECRPTSSQCI 572
ETK + QD+F +DK V SS + + +P C+
Sbjct: 358 ETKPVKQDFFYGKVSDKGVSSSKKKITETTSKPAEVVCV 396
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 364 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVISYSS 245
+ H P V+ L+ PN + CL IL WN PV++ +S
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNLNS 121
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 405 QVDYESYDWKKLD 443
QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1
Query: 363 TPTLQRWWNCCLHQTGRRMRKPVCAFCLTSGTYP**VTAHEHFSEFLGVFV---FSIPNG 193
TPT WN T P+ + +SGT P + S +GV V +IP G
Sbjct: 198 TPTTTNNWNSSSSFTSSTSSTPISSSYSSSGTLP---SKSNKSSNHVGVVVGCSVAIPVG 254
Query: 192 IVL 184
+VL
Sbjct: 255 VVL 257
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 538 EYLALVELSTSLSVPFHEK*SWTSFLVSSLE 446
+Y+A VE+S S+S+ E SFL S+L+
Sbjct: 76 KYVASVEISPSVSIQNRETDEIPSFLTSALQ 106
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +3
Query: 360 VWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKKLVQDY-----FSWNGTDKEVESST 524
+W E + L S+ V Y +W E+ + ++DY +W+ E E +
Sbjct: 156 LWESCEKIEKLGSEGIVGYMLEEWDNFVSMLEDARSDLEDYKEGDDSNWDDFGSESEDDS 215
Query: 525 RARYSSE 545
+ +S E
Sbjct: 216 KEAHSEE 222
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 420 SYDWKKLDPSSEETKKLVQDYFSWNGTDKEVESSTRA 530
SY+ K D +EE KLV+D +E ESS R+
Sbjct: 557 SYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRS 593
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 112 DFKRVYSNEDEAKSIPYFWEKFDPENYSIWY---AEYKYPEELAKVFMSCNLLRVCSR 276
+++ S +EAKS Y +P+N+ +Y Y Y + KV S L + S+
Sbjct: 230 EYELYLSKMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEWLNLYSQ 287
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 139 DEAKSIPYFWEKFDPENYSIW 201
D++K P FW++++ YSI+
Sbjct: 242 DDSKESPDFWKEYNALRYSIY 262
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 89 LKVPSTWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMLN 211
+++ W + P K LN+ L L R P G LN
Sbjct: 326 IEISVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELN 366
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 110 MISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMLNTNT 220
+++ +TP + +L SGRSL T G+ N +T
Sbjct: 843 LVTDTTTPYLSDFSLVNESGRSLLHLTAACGLSNAST 879
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 112 DFKRVYSNEDEAKSIPY 162
DF +YS ED+ SIP+
Sbjct: 117 DFTPIYSKEDQVVSIPF 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,497
Number of Sequences: 5004
Number of extensions: 55123
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -