Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0817
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 55 5e-08
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 54 6e-08
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 1.6
05_04_0146 + 18393447-18394043 29 2.1
02_05_0713 + 31159574-31160764 29 3.7
08_02_1070 - 24106152-24106967 28 4.8
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 28 4.8
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 28 4.8
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 4.8
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 28 4.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 6.4
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 28 6.4
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 27 8.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 249
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 268 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 327
Query: 250 CN 255
N
Sbjct: 328 MN 329
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 249
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 833 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 892
Query: 250 CN 255
N
Sbjct: 893 MN 894
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +3
Query: 258 ITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKK 437
+ G QR+D RK AF + + G + + G+W++RG E+ D D E Y+W K
Sbjct: 896 VGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTK 954
Query: 438 LDPSSEETKK----LVQDYFSWNGTDKEVESSTRARYSSECRPTSSQCIHISY 584
+D S E K+ +++D + G + +++ Y PT S + I Y
Sbjct: 955 VDISDEAQKERVSAMIEDLEPFEG-EALLDAKCFKTYIIITIPTISPLVTIQY 1006
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +3
Query: 258 ITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKK 437
+ G QR+D RK AF + + G + + G+W++RG E+ D D E Y+W K
Sbjct: 331 VGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIP-KFVMDEVYDMELYEWTK 389
Query: 438 LDPSSEETKKLV 473
+D S E K+ V
Sbjct: 390 VDISDEAQKERV 401
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 249
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 285 DLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 344
Query: 250 CN 255
N
Sbjct: 345 MN 346
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +3
Query: 267 MFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDP 446
M +R+D RK AF + + G + G+W++RG+++ D D E Y+W K+D
Sbjct: 345 MNKRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIP-KFVMDEVYDMELYEWTKVDL 403
Query: 447 SSEETKK----LVQDYFSWNGTD 503
S E K+ +++D + G D
Sbjct: 404 SDEAQKERVNAMIEDQEPFEGED 426
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 271 SRG*TKCANRLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLIGRWTTSP---TTGRNW 441
+RG TK A + +A + + E GC A RS+CS L G TT+P TG W
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS---LHGTTTTTPRWRQTGGPW 169
Query: 442 ILRARR 459
R +
Sbjct: 170 RRRQNK 175
>02_05_0713 + 31159574-31160764
Length = 396
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +3
Query: 312 VCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEET 461
+C + + ++S +W W + P SD + S+ W K D + +++
Sbjct: 345 ICAKSKGESFSMSKIWQWSNVKGKLPAGSDNCSETASFPWMKRDATGDKS 394
>08_02_1070 - 24106152-24106967
Length = 271
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Frame = -1
Query: 534 ILPWL---NFLPLCRFRSTRSSPGQVSW 460
I+PWL N PLCRF P SW
Sbjct: 236 IMPWLDVRNSCPLCRFELPTDDPQYESW 263
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 561 WTLVGIHLNILPWLNFLPLCRFRSTRSS 478
W+ V L +PW ++ LC+FR R S
Sbjct: 5 WSYVDRALRWIPWPDYFALCKFRFPRLS 32
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 298 RLSHPSACLVKTTIPPSLECGCGAERSSCSRCRLI 402
R HP++ LV+ T PP G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +1
Query: 304 SHPSACLVKTTIPPSLECGCGAERSSC 384
SH C+ K PP CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 370 ERSSCSRCRLIGRWTTSPTTGRNWILRARRPRNLSRTTSR 489
ER +C + WT S W+L+ R P LS S+
Sbjct: 137 ERGERGKCSMWTLWTHSQLVVVGWLLKRRPPTKLSELESQ 176
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 455 LARRIQFLPVVGLVVHLPIRRQREHELLSAPHPHSRD 345
+A + F+ ++G+ + L +RR+R+H L H D
Sbjct: 270 VAGAVSFMVILGVSIWLLLRRRRKHARLMREHQEMED 306
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
T +P V + PN D CL IL N W+
Sbjct: 60 TEDYPNKPPVVRFVSRMFHPNIYADGSICLDILQNQWS 97
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 367 RHTHTPEMVELLSSPNRQTDAKACLRILSNL 275
R TH V+++SSP + A + ILSNL
Sbjct: 383 RDTHLNIFVKIISSPTSGNEKAAAIGILSNL 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,698,077
Number of Sequences: 37544
Number of extensions: 375559
Number of successful extensions: 1123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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