Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0817
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38) 80 2e-15
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) 39 0.003
SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4) 29 2.1
SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8) 29 2.1
SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27) 29 2.1
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 29 2.1
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 28 5.0
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30) 28 5.0
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073) 28 6.6
SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_36141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 27 8.7
>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
Length = 90
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/58 (58%), Positives = 46/58 (79%), Gaps = 3/58 (5%)
Frame = +1
Query: 97 TFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLL 261
+ N+D +K+VYSNED E+K+IPYFWE FD E YS+W+ EYK Y ++L VFM+CNL+
Sbjct: 2 SMNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLV 59
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = +3
Query: 255 LITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 353
L+ GM QRL+K+ K F S+C+FGE++N +I+G
Sbjct: 58 LVGGMIQRLEKLVKNGFGSICIFGENHNCSIAG 90
>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
Length = 203
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 390 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYF 485
L+ DW VD SY ++L+P KKL++DYF
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYF 183
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 506 RGRKFNQGKIFK 541
RG+KFNQGK+FK
Sbjct: 192 RGKKFNQGKVFK 203
>SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)
Length = 512
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 585 CMKCVYIGWTLVGIHLNILPWLNFLPLCR 499
C KC YI + +G+H + W L +CR
Sbjct: 229 CGKCGYIKYYYLGLHEKLKNWFRNLNMCR 257
>SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 585 CMKCVYIGWTLVGIHLNILPWLNFLPLCR 499
C KC YI + +G+H + W L +CR
Sbjct: 126 CGKCGYIKYYYLGLHEKLKNWFRNLNMCR 154
>SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8)
Length = 203
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 585 CMKCVYIGWTLVGIHLNILPWLNFLPLCR 499
C KC YI + +G+H + W L +CR
Sbjct: 126 CGKCGYIKYYYLGLHEKLKNWFRNLNMCR 154
>SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)
Length = 314
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 585 CMKCVYIGWTLVGIHLNILPWLNFLPLCR 499
C KC YI + +G+H + W L +CR
Sbjct: 11 CGKCGYIKYYYLGLHEKLKNWFRNLNMCR 39
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 585 CMKCVYIGWTLVGIHLNILPWLNFLPLCR 499
C KC YI + +G+H + W L +CR
Sbjct: 154 CGKCGYIKYYYLGLHEKLKNWFRNLNMCR 182
>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 889
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 379 SSFPRHTHTPEMVELLSSPNRQTDAKACLR 290
S+ PR + E + LL P + DA+AC+R
Sbjct: 413 SAIPRSRRSFESLPLLQQPTSRRDARACVR 442
>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 869
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 441 DPSSEETKKLVQDYFSWNGTDKEVESSTRARYSSECRPTSSQCIHI 578
DP E ++ V+D S G D + S R+S+ +P S + +
Sbjct: 736 DPDKMEKRQSVKDMMSLFGQDTDDSSKPTRRFSASGKPQQSPALRL 781
>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
Length = 508
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 451 ARRPRNLSRTTSRGTEPTKR*KVQPGQDIQVNADQRPANVYTFHTI 588
+R R+L R T T +K K PG+ + V ++ R N+Y ++
Sbjct: 127 SRSRRDLLRRTWTSTLNSKNLKGLPGRSLNVTSNYRDLNIYCLFSV 172
>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
Length = 582
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 397 LIGRWTTSPTTGRNWILRARRPRNLSRTTSRGTEPT 504
+ W T+P TGR + R L RT R + T
Sbjct: 199 IANNWLTAPPTGREHLQNRTLDRTLDRTLDRSLDRT 234
>SB_21463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 385 NTSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNL 275
N P+H HTP+++ LS T+ C + S+L
Sbjct: 720 NLPGSPKHAHTPQLITDLSRSASGTNLSRCSQKTSSL 756
>SB_36141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = +1
Query: 322 LVKTTIPPSLECGCGAERSSCSRCRL-------IGRWTTSPTTG 432
L T PPS +C C +R +C L G+ T+P+TG
Sbjct: 83 LPPTPTPPSTKCSCNFDRDTCDFINLKSDKFDWTGKSGTTPSTG 126
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 330 DNNSTISGVWVWRGKELVFPLS-SDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDK 506
+ + +S V + RG + LS S+ Q + K DPSS+ K +QD W ++
Sbjct: 234 EKKAVMSAVQIARGLKATMNLSVSNPQRIQAIMNTCKEDPSSQLALKKIQDICEWKRSEI 293
Query: 507 EVESSTRARYSSECRPTSSQC 569
V +E + + +C
Sbjct: 294 SVADIAELENVTEVQVNAVEC 314
>SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 624
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +3
Query: 351 GVWVWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKEVESSTR 527
G +W G +V P ++ E +D P K L + YF W G D ++E +
Sbjct: 476 GCLLW-GSRVVIPPQGRVKLLQERHDGH---PGMVRMKMLARSYFWWPGLDADIEQKVK 530
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,925
Number of Sequences: 59808
Number of extensions: 427212
Number of successful extensions: 1363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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