Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0817
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 56 2e-08
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 56 2e-08
At1g32190.1 68414.m03959 expressed protein 32 0.33
At3g22170.1 68416.m02798 far-red impaired responsive protein, pu... 29 2.3
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 28 4.1
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 28 4.1
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 28 4.1
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 28 4.1
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,... 28 5.4
At3g56990.1 68416.m06344 glycine-rich protein conserved hypothet... 28 5.4
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 27 7.1
At2g40070.1 68415.m04923 expressed protein 27 7.1
At4g37200.1 68417.m05266 thioredoxin family protein contains Pfa... 27 9.4
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 27 9.4
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 DSMPKGTFNMDDFKRVYSNEDE---AKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 249
D +P +DD+KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 258 DLLPPSPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVT 317
Query: 250 CN 255
N
Sbjct: 318 LN 319
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 258 ITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKK 437
+ G QR+D RK +F + + G + + G+W++RG E+ D D E Y+W K
Sbjct: 321 VGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIP-KFIMDEVYDMELYEWTK 379
Query: 438 LDPSSEETKKLV 473
+D S E K+ V
Sbjct: 380 VDISDEAQKERV 391
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +1
Query: 79 DSMPKGTFNMDDFKRVYSNEDE---AKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMS 249
D +P +DD+KR+YSN +I FW+ +DPE YS+W+ +YKY +E F++
Sbjct: 259 DLLPPSPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVT 318
Query: 250 CN 255
N
Sbjct: 319 LN 320
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 258 ITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELVFPLSSDWQVDYESYDWKK 437
+ G QR+D RK +F + + G + + G+W++RG E+ D D E Y+W K
Sbjct: 322 VGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIP-KFIMDEVYDMELYEWTK 380
Query: 438 LDPSSEETKKLV 473
+D S E K+ V
Sbjct: 381 VDISDEAQKERV 392
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 289 CANRLSHPSACLVKTTIP-PSLECGCGAERSSCSRC 393
C + L PS K P PS CGCG C +C
Sbjct: 296 CCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKC 331
>At3g22170.1 68416.m02798 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 839
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 415 TSPTTGRNWILRARRPRNLSRTTSRGTEPTKR*KVQPGQDI 537
TSPT G + R+ +T S+ PTK+ KV P QD+
Sbjct: 686 TSPTQGLISVEEDNHSRSAGKT-SKKKNPTKKRKVNPEQDV 725
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 417 ESYDWKKLDPSSEETKKLVQDYFSWNGTDKEVESSTRARYSSECRPTSSQCIHIS 581
E YD K +E K + Y+SW K + S++ ++ +C Q I+IS
Sbjct: 284 EEYDELKPSTVTELMDKTFKSYYSW---CKYLHSTSNLKFPDDCDKQQLQLIYIS 335
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
+ +P T V + PN D CL IL N W+
Sbjct: 60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
+ +P T V + PN D CL IL N W+
Sbjct: 60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
+ +P T V + PN D CL IL N W+
Sbjct: 60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
putative (RPL27) identical to SP|Q9FLN4 ribosomal
protein L27, chloroplast precursor {Arabidopsis
thaliana}; similar to SP|P30155 50S ribosomal protein
L27, chloroplast precursor (CL27) {Nicotiana tabacum}
Length = 198
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 455 GDQETCPGLLLVERNRQRGRKFNQGK 532
GDQ PG ++V RQRG KF+ GK
Sbjct: 84 GDQVAKPGAIIV---RQRGTKFHAGK 106
>At3g56990.1 68416.m06344 glycine-rich protein conserved
hypothetical protein SPCC330.09 - Schizosaccharomyces
pombe, PIR:T41319
Length = 711
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 399 DWQVDYESYDWKKLDP--SSEETKKLVQDYFSWNGTDKEVESSTRARYSSE 545
D+Q+D +SY++ L P SS++ L+ ++F D E S ++ S +
Sbjct: 512 DFQIDKDSYEYGVLHPVASSKKQPSLLDEHFEAVSDDDENSDSDASQPSDD 562
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -3
Query: 382 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 269
T +P V + PN D CL IL N W+
Sbjct: 60 TEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 367 AERSSCSRCRLIGRWTTS-PTTGRNWILRARRPRNLSRTTSRGTEPTKR*KVQPGQDI 537
A + + S R G T S P+T +R LSR+T+R + PT R + P + I
Sbjct: 253 ASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTLPPSKTI 310
>At4g37200.1 68417.m05266 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; identical to cDNA
thioredoxin-like protein (hcf164 gene) GI;12049652
Length = 261
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 435 KLDPSSEETK--KLVQDYFSWNGTDKEVESSTRARYSS 542
K +P S ETK KLV D + KEVESS+ SS
Sbjct: 42 KPNPESSETKQEKLVIDNGETSSASKEVESSSSVADSS 79
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 414 YESYD--WKKLDPSSEETKKLVQDYFSWNGTDKEVESSTRARYSSECRP 554
YE D WK+LDP + + D + N TD + S+ + S+ RP
Sbjct: 449 YEDSDAKWKELDPKYHFSCQFTADLIAMNVTDFIITSTYQEIAGSKDRP 497
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,274,731
Number of Sequences: 28952
Number of extensions: 299190
Number of successful extensions: 917
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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