Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0731
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   118   7e-28
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   8.9  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   8.9  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  118 bits (284), Expect = 7e-28
 Identities = 54/88 (61%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
 Frame = +2

Query: 248 QGILHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINI 427
           + + H ALRN   KP+ VNG+DV   V  VL HMKEFSD V SG WKGYTGK I  ++N+
Sbjct: 101 RAVFHPALRNVSEKPMKVNGQDVMPGVRKVLRHMKEFSDAVRSGAWKGYTGKPIKSIVNV 160

Query: 428 GIGGSDVGPLMVTEALKPYA-NHLKVHF 508
           GIGGSD+GP+MVTEALKPY   +L++HF
Sbjct: 161 GIGGSDLGPVMVTEALKPYGQENLELHF 188



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = +3

Query: 6   YYNENSTKIKMLQLFQQERERFEKNSLCIP--TPNDGDILLDYSKNRINSDVFKLLLDLA 179
           +Y      + + +LF ++  RFEK S         DG IL D+SKN I  +  +LL+ LA
Sbjct: 18  HYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETVELLVKLA 77

Query: 180 KSRNVEQARDAMFAGQKINFTEDRA 254
           K  NVE  RDA+FAG+ INFTEDRA
Sbjct: 78  KEANVEGLRDALFAGEHINFTEDRA 102



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +1

Query: 505 FLSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNA 624
           F+SNIDGTHLAE LKK +PET LF+IASKTFTT ET TNA
Sbjct: 188 FVSNIDGTHLAEALKKCDPETTLFLIASKTFTTAETCTNA 227


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 269 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVIN 424
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ IN
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGIN 721


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 180 KSRNVEQARDAMFAGQK-INFTEDRAYCI*LCVTVRT 287
           K+  V++AR      +  +NF+EDR  C  LC  V T
Sbjct: 787 KADTVKRARQNNIKNKDDVNFSEDRKKCCALCGIVGT 823


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 614 IVSCVVKVLDAMMNSAVSGFSFFKTSA 534
           I S   K + A  NS +SGFS   TSA
Sbjct: 194 ISSADAKTVSASSNSTISGFSTSTTSA 220


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = +3

Query: 21   STKIKMLQLFQQERERFEKNS 83
            STKI   QL QQE E FEK+S
Sbjct: 1273 STKI-FEQLTQQEEEEFEKDS 1292


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 355 ILRSSSKRAMEGVYGKSYNRRDQHWYWRLRC 447
           ++ S    A E VYGK Y+R     YW L C
Sbjct: 357 VVGSPEYMAPEVVYGKKYDRTVD--YWSLGC 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,888
Number of Sequences: 5004
Number of extensions: 52888
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)