Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0731
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0143 + 31962241-31962291,31962385-31962506,31962572-319626... 74 8e-14
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816... 73 1e-13
09_04_0439 - 17594131-17594271,17595018-17595100,17595199-175953... 50 1e-06
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 44 1e-04
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986... 32 0.32
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 32 0.32
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 30 1.3
12_01_0731 - 6516894-6517473,6517485-6519574 30 1.7
12_01_0727 + 6446283-6449300 30 1.7
12_01_0715 - 6230393-6231559,6233234-6234553 30 1.7
12_01_0722 + 6355972-6359031 29 2.3
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 2.3
12_01_0741 + 6649988-6653065 29 3.0
12_01_0740 + 6646471-6649407 29 3.0
12_01_0736 + 6582371-6585370 29 4.0
12_01_0718 + 6339982-6342981 29 4.0
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614 29 4.0
12_01_0708 - 6137865-6140909 28 5.2
12_01_0686 - 5855216-5858263 28 6.9
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 6.9
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 6.9
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 6.9
>03_06_0143 +
31962241-31962291,31962385-31962506,31962572-31962671,
31962775-31962822,31963096-31963251,31963330-31963426,
31963525-31963567,31963970-31964037,31964139-31964223,
31964297-31964345,31964566-31964638,31964708-31964768,
31965417-31965483,31965709-31965762,31965854-31965982,
31966485-31966548,31966655-31966728,31966793-31966867,
31966972-31967040,31967759-31967848,31968014-31968121,
31968251-31968298
Length = 576
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +2
Query: 230 DKLH--RRQGILHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGK 403
DK++ + +LH+ALR +++ I NG +V +V V + +K+FS+ SG W G TGK
Sbjct: 106 DKINSTENRSVLHVALRAPRDEVINSNGVNVVPEVWGVKDKIKQFSETFRSGSWVGATGK 165
Query: 404 AITDVINIGIGGSDVGPLMVTEALK 478
A+T+V+++GIGGS +GPL V AL+
Sbjct: 166 ALTNVVSVGIGGSFLGPLFVHAALQ 190
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +1
Query: 505 FLSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNA 624
FL+N+D +A +K L+PET L ++ SKTFTT ET+ NA
Sbjct: 206 FLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNA 245
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 39 LQLFQQERERFEKNSLCIPTPNDGD-ILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAM 215
L+ + ER + + C+ ++ + I LDYS+ R + + L LA++ +++ + M
Sbjct: 43 LRHLMHDVERCKAMTACLLIDSEYEGIYLDYSRQRATGETMEKLFKLAEAAKLKEKIEKM 102
Query: 216 FAGQKINFTEDRA 254
F G KIN TE+R+
Sbjct: 103 FRGDKINSTENRS 115
>06_01_1040 +
8163654-8163704,8163814-8163935,8164011-8164092,
8164166-8164213,8164516-8164671,8164747-8164843,
8164942-8164984,8165375-8165442,8165533-8165617,
8165698-8165746,8165968-8166040,8166119-8166179,
8167114-8167180,8167400-8167453,8167537-8167665,
8168192-8168255,8168366-8168439,8168523-8168576,
8168696-8168764,8169394-8169483,8169656-8169763,
8169876-8169923
Length = 563
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Frame = +2
Query: 224 SKDKLH--RRQGILHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYT 397
S DK++ + +LH+ALR +++ I +G +V +V V + +K+FS+ SG W G T
Sbjct: 98 SGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVWGVKDKIKQFSETFRSGSWVGAT 157
Query: 398 GKAITDVINIGIGGSDVGPLMVTEALK 478
GKA+T+V+++GIGGS +GPL V AL+
Sbjct: 158 GKALTNVVSVGIGGSFLGPLFVHAALQ 184
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +1
Query: 505 FLSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNA 624
FL+N+D +A +K L+PET L ++ SKTFTT ET+ NA
Sbjct: 200 FLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNA 239
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 114 ILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFAGQKINFTEDRA 254
I LDYS+ R + + L LA++ +++ + MF+G KIN TE+R+
Sbjct: 63 IFLDYSRQRATGETMEKLFKLAEAAKLKEKIEKMFSGDKINSTENRS 109
>09_04_0439 -
17594131-17594271,17595018-17595100,17595199-17595355,
17595438-17595576,17595668-17595720,17596150-17596257,
17596345-17596413,17596505-17596570,17596651-17596794,
17597372-17597455,17597539-17597637,17597753-17597875,
17598283-17598831
Length = 604
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 290 PILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKA--ITDVINIGIGGSDVGPLMV 463
P L + T + L+ + FS VVSG+ K + A T +++IGIGGS +GP V
Sbjct: 153 PGLAPNSFLRTKIETTLDRILAFSQDVVSGKIKPPSSPAGRFTQILSIGIGGSALGPQFV 212
Query: 464 TEALKPYANHLKVHFYLTSTAP 529
+EAL P LK+ F + +T P
Sbjct: 213 SEALAPDNPPLKIRF-IDNTDP 233
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +2
Query: 260 HIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKA--ITDVINIGI 433
H LRN P L + + LE + F+ V+S + + + A T +++IGI
Sbjct: 146 HYWLRN----PALAPNSFLRDKIETTLERILAFASDVISAKIRPPSSPAGRFTQILSIGI 201
Query: 434 GGSDVGPLMVTEALKPYANHLKVHFYLTSTAP 529
GGS +GP V EAL P L + F + +T P
Sbjct: 202 GGSSLGPQFVAEALAPDNPPLMIRF-IDNTDP 232
>09_06_0182 -
21397221-21397575,21397712-21398076,21398510-21398685,
21398802-21399039,21399627-21400118
Length = 541
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -2
Query: 353 PSCVLVPH*HQC*HPYRSPG*ACSDGYAELYAVCPVFCEVYLLTCEHGISGLFNISALSE 174
P +VPH QC HP R P A GYAE ++ V E+ H + G F + ++ E
Sbjct: 415 PPSSIVPHFRQCIHP-RIPQLAII-GYAESWSNLCV-SELLSKWLAHFLHGSFRLPSVKE 471
Query: 173 IEEQL 159
+EE +
Sbjct: 472 MEEDI 476
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 422 NIGIGGSDVGPLMVTEALKPYAN--HLKVHFYLTSTAPTWL 538
N+ SDV + V E L+P+ N HL++ Y ST+PTWL
Sbjct: 959 NLKSRSSDV-EISVLEGLQPHPNLRHLRIINYRGSTSPTWL 998
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 461 VTEALKPYAN--HLKVHFYLTSTAPTWL 538
V E L+P+ N HL+++ Y +T PTWL
Sbjct: 900 VLEGLEPHTNLKHLEIYSYNGATPPTWL 927
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P +G + LDYS NR +S
Sbjct: 594 IPIPKEGSVTLDYSNNRFSS 613
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P +G + LDYS NR +S
Sbjct: 587 IPIPKEGSVTLDYSNNRFSS 606
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P +G + LDYS NR +S
Sbjct: 509 IPIPKEGSVTLDYSNNRFSS 528
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFAG 224
IP P G I LDYS NR +S L KS V +A D +G
Sbjct: 601 IPVPQKGSITLDYSTNRFSSMPLNFSSYL-KSTVVLKASDNSLSG 644
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 148 VMFLSCSSISLRAEMLNKPEMPCSQVKR*TSQKTGHTAY 264
V F SC+S+ AE+LN ++ CS + Q+ T +
Sbjct: 353 VFFSSCNSVKFHAELLNFLQIECSDIHGKQKQQKRTTTF 391
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P G + LDYS NR +S
Sbjct: 594 IPIPEQGSVTLDYSNNRFSS 613
>12_01_0740 + 6646471-6649407
Length = 978
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P G I LDYS NR +S
Sbjct: 560 IPVPQKGSITLDYSTNRFSS 579
>12_01_0736 + 6582371-6585370
Length = 999
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 69 FEKNSLCIPTPNDGDILLDYSKNRINS 149
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>12_01_0718 + 6339982-6342981
Length = 999
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 69 FEKNSLCIPTPNDGDILLDYSKNRINS 149
F K IP P G I LDYS N+ +S
Sbjct: 575 FNKIEGVIPIPQKGSITLDYSNNQFSS 601
>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
Length = 266
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 209 ISGLFNISALSEIEEQ--LKNITVDTVLGIVK*DVSIVRCWDTEAVLFETLPFLLEKLEH 36
I G F+ A + ++ ++ I + ++ I + D + WD E ++ + FL +K +
Sbjct: 204 IGGQFDCQAFVSVSQKPDIRKIFKNILINITELDYGAIDAWDEERLINKLREFLNDKRLN 263
Query: 35 FN 30
FN
Sbjct: 264 FN 265
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINS 149
IP P +G +LDYS N+ +S
Sbjct: 600 IPVPQEGSTMLDYSSNQFSS 619
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 90 IPTPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAM 215
IP P +G LDYS N+ +S L L ++ + +R+ +
Sbjct: 599 IPIPQEGSSTLDYSSNQFSSIPLHYLTYLGETLTFKASRNKL 640
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 505 FLSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETIT 618
FLS+ + THL + +KLNP+ +L T E ++
Sbjct: 979 FLSDDNKTHLLNMSRKLNPKRSLLSFVGVIINTIELLS 1016
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 263 YAVCPVFCE----VYLLTCEHGISGLFNISALSEIEEQLKNITVDT 138
YA C V E +YLLTC H I ++ +A EI Q N DT
Sbjct: 1282 YATCSVVAENGNSLYLLTCAHTIDHVY--TATKEISVQDINRLFDT 1325
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +2
Query: 461 VTEALKPYAN--HLKVHFYLTSTAPTWL 538
V E L+P+ N HL++ Y +T+PTWL
Sbjct: 972 VLEGLEPHHNLKHLQLTRYSGATSPTWL 999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,084
Number of Sequences: 37544
Number of extensions: 344986
Number of successful extensions: 958
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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