Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0731
         (624 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   3.4  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    24   3.4  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   7.9  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 266 ALRNRQNKPILVNGKD-VSTDVNAVLEHMKEFSD 364
           ALR+   KPIL NG+D V   + + L+  +E++D
Sbjct: 496 ALRSMAGKPIL-NGRDSVRKVLESFLQRGREYAD 528


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 88  VSQHRTMETSYLTIPRTVSTVMFLSCSSISLRAEMLNKPEM 210
           VS H T  TSY T+P   S +   SCSS    + M + P M
Sbjct: 5   VSNHPTTHTSYSTMP-GFSGLDDKSCSSRYTDSVMNSYPPM 44


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 99  PNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFAGQKINFTED 248
           P+  ++ +   +  I+++  +L +DL  S N E+ +  M   +  NF  D
Sbjct: 437 PSITNVTVRIEEKLISNEAVELDIDLRTSCNCEKNKKPMELSELCNFNGD 486


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,457
Number of Sequences: 2352
Number of extensions: 13889
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)