Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0731
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...    77   1e-14
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    46   2e-05
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    36   0.022
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   5.8  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/77 (49%), Positives = 53/77 (68%)
 Frame = +2

Query: 248 QGILHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINI 427
           + +LH+ALR  ++  I  +G +V  +V  VL+ +KEFSD++ SG W G TGK + DVI I
Sbjct: 94  RSVLHVALRAPKDAVIKADGMNVVPEVWNVLDKIKEFSDKIRSGSWVGATGKPLKDVIAI 153

Query: 428 GIGGSDVGPLMVTEALK 478
           GIGGS +GPL V  AL+
Sbjct: 154 GIGGSFLGPLFVHTALQ 170



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +1

Query: 505 FLSNIDGTHLAEVLKKLNPETALFIIASKTFTTQETITNA 624
           FL+NID   +A  +  LNPET L ++ SKTFTT ET+ NA
Sbjct: 186 FLANIDPVDVARNISGLNPETTLVVVVSKTFTTAETMLNA 225



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 105 DGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAMFAGQKINFTEDRA 254
           DG +LLDYS+ R   +    LL+LAK+  + +    MF G+ IN TE+R+
Sbjct: 47  DG-LLLDYSRQRATVETMDKLLNLAKASQLTEKISRMFNGEHINSTENRS 95


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = +2

Query: 260 HIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKA--ITDVINIGI 433
           H  LRN +  P       + T +   L+ +  FSD ++SG+ K  +      T ++++GI
Sbjct: 137 HYWLRNSKLAP----KPTLKTLIENTLDSICAFSDDIISGKIKPPSSPEGRFTQILSVGI 192

Query: 434 GGSDVGPLMVTEALKPYANHLKVHFYLTSTAP 529
           GGS +GP  V EAL P    LK+ F + +T P
Sbjct: 193 GGSALGPQFVAEALAPDNPPLKIRF-IDNTDP 223


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 97  HRTMETSYLTIPRTVSTVMFLSCSSISLRAEMLNKPEMPCSQVKR*TSQKTGHTAYSSA 273
           H T  T   T  RT  ++ F +CSS  L   +L  P   C  V   T  +T  +A SSA
Sbjct: 383 HTTATTRTSTSSRTSISLSFCTCSSDVLDTALLTNPHYSCKPVVSRTGSRTPQSARSSA 441


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 26  KN*NAPTFPTRTGAFRKEQPLYPNTE 103
           +N N  T+P R G F   QP YPNT+
Sbjct: 292 QNQNQYTYPPRPGPFPPRQP-YPNTD 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,476
Number of Sequences: 28952
Number of extensions: 281156
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)