Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0722
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    28   0.93 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   5.0  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 125 LENSFILIQQIDVSAEILDNVQTHLDPYDI 214
           + NS   I  IDV+ E L N Q HL PY +
Sbjct: 451 ISNSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 107 EYV*SDLENSFILIQQIDVSAEILDNVQT-HLDPYDIDQD 223
           E+V SDLE+ F    + DV    +DN  T  L P + D D
Sbjct: 276 EFVGSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDD 315


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 172 FSRYVYLLDENKTIF*ITLDILVLCLVDIFVALFVTHYIYSLYTSSFYFIY 20
           F +Y  LLD + +   +   +L+  L   +   ++TH + +LYTSS  ++Y
Sbjct: 498 FEKYC-LLDHSTSTISLFFGLLIFTLKSAYG--YLTHRLSALYTSSENWVY 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,510
Number of Sequences: 5004
Number of extensions: 41257
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)