Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0722
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370     29   2.9  
07_01_0017 - 114497-114547,114700-114816,114917-114997,115312-11...    28   6.8  
01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    27   8.9  

>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
          Length = 321

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 308 QQRSGLCSTNITDLNNTACISMNSRVPNSLD 216
           +  S  CS++  D ++ AC S+N+  P+S+D
Sbjct: 10  ESNSCTCSSSSNDASSAACSSLNASSPSSVD 40


>07_01_0017 -
           114497-114547,114700-114816,114917-114997,115312-115371,
           116029-116238,116412-116720,116790-117080
          Length = 372

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 384 PTHFQEGTVILFVDAIGTGSAFSLASTTIGALFYQYY*FKQH 259
           P H   G ++L V AIG   AF  +   IG L  +   F  H
Sbjct: 243 PLHVLHGIIVLCVSAIGCPDAFIHSVQEIGPLKIERLDFSDH 284


>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 293 LCSTNITDLNNTACISMNSRVPNSLDRYHTDPNVFVRC 180
           LC    T L   + +S  + VP  L RYH  P+    C
Sbjct: 67  LCGVPYTALPIASVLSAAASVPMLLRRYHVTPHAAAEC 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,605,676
Number of Sequences: 37544
Number of extensions: 215358
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)