Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0722
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-9|CAA96661.2|  223|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z72511-9|CAA96661.2|  223|Caenorhabditis elegans Hypothetical
           protein F55A11.8 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 305 QRSGLCSTNITDLNNTACISMNSR---VPNSL-DRYHTDPNVFVRCQEF 171
           Q+  L   N TD+ N  C ++NSR   V NS  D +   P  FV  Q F
Sbjct: 141 QKENLAEMNSTDIINVHCKNLNSRLEHVANSYSDAWKYPPPAFVPSQSF 189


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -1

Query: 151 LDENKTIF*ITLDILVLCL-VDIFVALFVTHYIYSLYTSSFYFIYFXLD 8
           +++++ I+   LDIL+L L +DI       +Y +S+  ++FY   F LD
Sbjct: 79  MEKHEDIYNKALDILLLELNIDIQTLFLKDYYAFSMILAAFYGRKFALD 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,681,069
Number of Sequences: 27780
Number of extensions: 220122
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)