Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0722
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 528 SLPSLKTIAFMGLFKIARIF 469
           SL  + TI  +G+FKIA IF
Sbjct: 78  SLGQMMTIGGLGVFKIAPIF 97


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 528 SLPSLKTIAFMGLFKIARIF 469
           SL  + TI  +G+FKIA IF
Sbjct: 131 SLGQMMTIGGLGVFKIAPIF 150


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 573 IPVIGWHG 596
           +P+ GWHG
Sbjct: 191 VPISGWHG 198


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 573 IPVIGWHG 596
           +P+ GWHG
Sbjct: 118 VPISGWHG 125


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 528 SLPSLKTIAFMGLFKIARIF 469
           +L  + T+  +G+FKIA +F
Sbjct: 40  ALGQMLTVGGLGVFKIAPLF 59


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 573 IPVIGWHG 596
           +P+ GWHG
Sbjct: 134 VPISGWHG 141


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 284 TNITDLNNTACISMNSRV 231
           T + +LN TAC ++  RV
Sbjct: 41  TKMRELNATACAALYERV 58


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 573 IPVIGWHG 596
           +P+ GWHG
Sbjct: 191 VPISGWHG 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,155
Number of Sequences: 438
Number of extensions: 2694
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)