Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    31   0.15 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.4  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   4.4  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   4.4  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   5.8  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   7.7  

>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 488 IFRLQKRGSNSIRRCSFISIGKFKTIYMRHSPINRQRVSLSIYKTGEGHI 339
           IFR  K G   +R  +F+ +GKF++   RH     +RV  ++ K  EG I
Sbjct: 39  IFR-SKIGKGDLRFGTFVDVGKFQSWKWRHWGCVTERVLRNVNKKFEGDI 87


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 396  AVTHIYSFKLAYRNKGTPTN*VTPPF---L*SENQV*NIRDVDASLHSGTQIK 545
            AV H++S +   R    P + + PPF   + S N +  IR +D  LHS   ++
Sbjct: 969  AVDHVFSRQFKLRLMALPGSRIRPPFRSLVVSINGLATIRTLDNYLHSRISVR 1021


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 279 SPYVCLIQF*STSGGDGSMSNLRFHYSLNDDHDNQYRLA 163
           SPY CLI+F      D   + L    +L+D  D   RLA
Sbjct: 608 SPY-CLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLA 645


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 210 FHYSLNDDHDNQYRLALETKII 145
           FHY LN+D  + YRL +  K +
Sbjct: 48  FHYGLNEDSISYYRLDVAKKSV 69


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 216 LRFHYSLNDDHDNQYRLALETKIIKK 139
           +R+HY  NDDH   Y +  +   + K
Sbjct: 8   IRWHYDANDDHTPIYSVDFQKNSLNK 33


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 294 RVNNANSVLMFDQKTDMPLACFVYR*TYSL 383
           RV   N  L FDQ  DMPL  +V + T  L
Sbjct: 320 RVVGENLELKFDQYKDMPLLNYVIQETLRL 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,525
Number of Sequences: 5004
Number of extensions: 40313
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)