Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8570| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69)                27   8.0  
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_8570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 192 HLMNSEI*DCSLIHHRQRCFRTELNKRRERLRTGRVNNANSVLMFDQKTDMPL 350
           HL  S     + I +RQ    ++ + RR+RLR   + +  +V ++ + TD+ L
Sbjct: 5   HLATSRSQPATAIGNRQSWMGSKKDPRRDRLRDSSIIHTRAVSLYQRHTDITL 57


>SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69)
          Length = 115

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 99  VLHVQLINYEKKNIF*LFSFPTPSDIDYHDHHLMNSEI*DCSLIHHRQRCFRTELNKRRE 278
           +L  QL      ++  L    + S ++Y+D H++NS    CS +  R+    T     +E
Sbjct: 4   ILPQQLAECLVNSVQSLLIIDSRSFLEYNDAHVINSINIGCSKLIKRR--LITNKISIQE 61

Query: 279 RLRTG---RVNNANSVLMFDQKT 338
            L+TG   + N    V+++DQ T
Sbjct: 62  LLKTGENVQPNQLGKVIVYDQDT 84


>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 419 KTIYMRHSPINRQRVSLSIYKTGEGH 342
           KT+ M  SP + +R+SLS+  T E H
Sbjct: 363 KTLSMSTSPAHNRRLSLSLALTSESH 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,075
Number of Sequences: 59808
Number of extensions: 276065
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)