Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004890-1|AAO47868.1|  824|Drosophila melanogaster RE52324p pro...    29   3.3  
AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p pro...    29   3.3  
AF097636-1|AAF63187.1| 1368|Drosophila melanogaster bicoid-inter...    29   3.3  
AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,...    29   3.3  
AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,...    29   3.3  
AE013599-3224|AAS64905.1|  274|Drosophila melanogaster CG33226-P...    29   5.7  

>BT004890-1|AAO47868.1|  824|Drosophila melanogaster RE52324p
           protein.
          Length = 824

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LIHHRQRCFRTELNKRRERLRTGRVNNA 308
           ++HHRQ  +RT  N++R R  +   ++A
Sbjct: 396 MLHHRQHHYRTRKNRKRRRFDSNNTSHA 423


>AY052142-1|AAK93566.1| 1367|Drosophila melanogaster SD09926p
           protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LIHHRQRCFRTELNKRRERLRTGRVNNA 308
           ++HHRQ  +RT  N++R R  +   ++A
Sbjct: 396 MLHHRQHHYRTRKNRKRRRFDSNNTSHA 423


>AF097636-1|AAF63187.1| 1368|Drosophila melanogaster
           bicoid-interacting protein BIN3 protein.
          Length = 1368

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LIHHRQRCFRTELNKRRERLRTGRVNNA 308
           ++HHRQ  +RT  N++R R  +   ++A
Sbjct: 396 MLHHRQHHYRTRKNRKRRRFDSNNTSHA 423


>AE013599-166|AAM68350.1| 1367|Drosophila melanogaster CG8276-PB,
           isoform B protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LIHHRQRCFRTELNKRRERLRTGRVNNA 308
           ++HHRQ  +RT  N++R R  +   ++A
Sbjct: 396 MLHHRQHHYRTRKNRKRRRFDSNNTSHA 423


>AE013599-165|AAF57267.2| 1367|Drosophila melanogaster CG8276-PA,
           isoform A protein.
          Length = 1367

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LIHHRQRCFRTELNKRRERLRTGRVNNA 308
           ++HHRQ  +RT  N++R R  +   ++A
Sbjct: 396 MLHHRQHHYRTRKNRKRRRFDSNNTSHA 423


>AE013599-3224|AAS64905.1|  274|Drosophila melanogaster CG33226-PA
           protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = -1

Query: 363 IQNRRGAYQFFGQTLKLNSHYLRGQFVASPYVCLIQF*STSGGDGSMSNLRFHYSLNDDH 184
           +Q  +  Y F G +L  +  + R   +   Y+C  Q+ S  G +  +  +  H S  D H
Sbjct: 62  VQILQRGYHFCGGSLISSLRFGRYSGITPRYLCSSQYCSPFGPEIDVKRIFLHSSYRDYH 121

Query: 183 DNQYRLALETKIIK 142
           +    L L  K ++
Sbjct: 122 NYDIALFLLAKPVR 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,760,516
Number of Sequences: 53049
Number of extensions: 411724
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2193288294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)