Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-12|ABR92602.1|  532|Caenorhabditis elegans Udp-glucuronos...    28   4.0  
U97009-11|AAC69026.1|  533|Caenorhabditis elegans Udp-glucuronos...    28   4.0  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    28   4.0  
U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    28   5.3  
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    28   5.3  
AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     27   9.3  

>U97009-12|ABR92602.1|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein9, isoform b protein.
          Length = 532

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 105 HVQLINYEKKNIF*LFSFPTPSDIDYHDHHLMNSEI 212
           ++++INY   +   L    TP+  D+ D HLMN+ +
Sbjct: 70  NIEIINYYPDHYAELLKKKTPTFPDFWDSHLMNNPV 105


>U97009-11|AAC69026.1|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein9, isoform a protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 105 HVQLINYEKKNIF*LFSFPTPSDIDYHDHHLMNSEI 212
           ++++INY   +   L    TP+  D+ D HLMN+ +
Sbjct: 71  NIEIINYYPDHYAELLKKKTPTFPDFWDSHLMNNPV 106


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 297 VNNANSVLMFDQKTDMPLA 353
           V+NA ++LM+D+ TD PLA
Sbjct: 68  VSNAMNILMWDENTDWPLA 86


>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 243 RCFRTELNKRRERLRTGRVNNANSVLMF 326
           RCFRTE++K     +  RV+  + V MF
Sbjct: 268 RCFRTEISKSASEAKLYRVHEFSKVEMF 295


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 243 RCFRTELNKRRERLRTGRVNNANSVLMF 326
           RCFRTE++K     +  RV+  + V MF
Sbjct: 268 RCFRTEISKSASEAKLYRVHEFSKVEMF 295


>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 360 QNRRGAYQFFGQTLKLNSHYLRGQFVASPYVCLIQF*STSGGDGSMSNLR 211
           + R   +  FGQ L   +  +R  FVA  Y C + +  T GG G+M+  R
Sbjct: 148 RGRSEVWNLFGQVLDSLTQ-VRLPFVAC-YACKVLYTDTGGGTGNMTRHR 195


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 340 SVFWSNIKTEFALFTRPVRSLSLRLFNS 257
           S+F++N   EFA FT P++   L +FN+
Sbjct: 59  SLFFANAH-EFAYFTAPLKVFQLNIFNT 85


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 340 SVFWSNIKTEFALFTRPVRSLSLRLFNS 257
           S+F++N   EFA FT P++   L +FN+
Sbjct: 59  SLFFANAH-EFAYFTAPLKVFQLNIFNT 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,587
Number of Sequences: 27780
Number of extensions: 221631
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)