Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 225 MSNLRFHYSLNDDHDNQYRLALET---KIIKKCFFFHN 121
           M NL     +ND   N+Y LAL     KII   F F++
Sbjct: 363 MENLPQSGRINDPEGNEYMLALSNRMQKIINNDFNFND 400


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 225 MSNLRFHYSLNDDHDNQYRLALETKIIK 142
           + NL +   +N  H N+Y LAL  ++ K
Sbjct: 361 IQNLAYSGRMNRIHKNEYMLALSNRMQK 388


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 378 SKFIDIQNRRGAYQFFGQTLKLNSHYLRGQFVASPYV 268
           SK  D+ + RG    +   L LN +YL       PY+
Sbjct: 246 SKEYDLPDYRGEEYLYSHKLLLNRYYLERLSNDLPYL 282


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 159 PTPSDIDYHDH 191
           P P ++DYHD+
Sbjct: 321 PPPPNLDYHDY 331


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 414 YIYASQPD 391
           Y+YASQPD
Sbjct: 561 YVYASQPD 568


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -2

Query: 545 FYLGTAVQ*CINVSDILNLIFRLQKRGSNSIRRCSFI 435
           FY    +  C+ ++ +  L+F L       +  CS I
Sbjct: 251 FYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSLCSSI 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,036
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)