Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0706
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02940.1 68418.m00237 expressed protein                             28   3.7  
At5g43745.1 68418.m05349 phosphotransferase-related similar to s...    27   6.5  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    27   8.7  

>At5g02940.1 68418.m00237 expressed protein 
          Length = 813

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 93  VIVLHVQLINYEKKNIF*LFSFPTPSDIDYHDHHLMNSEI*DCSLI 230
           +I ++  L+NY K N+F L SFP  + + Y    L   E+  C ++
Sbjct: 423 LIKIYRHLLNYSK-NVFNLCSFPNLTGMKYRQLRLGFQEVVVCGIL 467


>At5g43745.1 68418.m05349 phosphotransferase-related similar to
           streptomycin-3'-phosphotransferase [Streptomyces
           griseus] GI:153164
          Length = 817

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 93  VIVLHVQLINYEKKNIF*LFSFPTPSDIDYHDHHLMNSEI*DCSLIHHRQRCFRTELNKR 272
           +I ++  L+NY K N+F L SFP      Y    L   E+  C L+   +  F    N  
Sbjct: 427 LIKIYRHLLNYSK-NVFNLCSFPNLVGTKYRQLRLGFQEVVVCGLLRDGKVNFHP--NDN 483

Query: 273 RERLRTGRV 299
            E + T ++
Sbjct: 484 EELMETDKL 492


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 231 HHRQRCFRTELNKRRERLRTGRVNNANSVLMFDQKTDMPLACFV 362
           HH+++CF  + + +R+R + G  +    V+    KT M    F+
Sbjct: 50  HHQEQCFVPQSSLKRKRNQPGNPDPEAEVMALSPKTLMATNRFI 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,367
Number of Sequences: 28952
Number of extensions: 196494
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)