Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0700
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.53 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.53 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.7  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   3.7  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   6.5  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   6.5  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 292 SGCGRCRVWSMFVRYVRFSE 351
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 476 ARKIRGRPENAGPDPVRNVRRFSRV 402
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 307 TGRIRFPSKPDTPRSSE-PSLFRSYGSNLPTSL 212
           +G  R+P  P   R+S  PSL   Y  +LP+S+
Sbjct: 246 SGSTRYPFVPANTRASHSPSLLEPYAHSLPSSV 278


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 163 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 35
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = -1

Query: 577 SRIPLVRASSELTVERRSYRIVPSRTKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECH 398
           SRI    A+S L      YR+     K N  DLR G S   +R+ + +  +   DF +  
Sbjct: 248 SRIYPYAAASNLRNLLSLYRLPNCFGKLNSFDLRKGSSTSLKRSSMYLARKENQDFDDQS 307

Query: 397 IKYIQFLRPHYIKI 356
            + +  ++  Y ++
Sbjct: 308 TQILNHIKTAYYEL 321


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 534 NGGRTESCRRARNETDTTYG*EDPRKAGERGSGSSPKRK-TIFASVILNI 388
           NGG  +    +   +    G ++    G  GSGSS  RK T F++ + N+
Sbjct: 11  NGGTNQGMESSSANSPEMNGTQNSMSVGMSGSGSSQNRKITQFSNKLYNM 60


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 329 TNIDQTRHRPHPLPVQTRHAPV 264
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 218 FPYLHYSID*RLFTLETCCGYGYEPARHL 132
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,941
Number of Sequences: 5004
Number of extensions: 52716
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)