Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0700
         (607 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein LO...    31   4.2  
BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein LO...    31   4.2  
AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.              31   4.2  
AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.              31   4.2  
U30461-1|AAB52519.1|  554|Homo sapiens GABAA receptor subunit al...    29   9.6  
BC035055-1|AAH35055.1|  554|Homo sapiens gamma-aminobutyric acid...    29   9.6  

>BC093754-1|AAH93754.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 138
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>BC093752-1|AAH93752.1|  587|Homo sapiens hypothetical protein
           LOC51057 protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 138
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AF131737-1|AAD20026.1|  587|Homo sapiens Unknown protein.
          Length = 587

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 138
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>AC079353-1|AAY24034.1|  423|Homo sapiens unknown protein.
          Length = 423

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   SVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRC 138
           SVR  W+P++ R+G+ ++ +++      +S D E   + C + C
Sbjct: 120 SVRTEWDPLDVRFGT-KQPYQVFTVEHSVSVDKEPMADSCIYEC 162


>U30461-1|AAB52519.1|  554|Homo sapiens GABAA receptor subunit
           alpha4 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 492 FRFVRDGTILYDRRSTVSSE 551
           FR +R+GTILY  R T+S+E
Sbjct: 152 FRIMRNGTILYTMRLTISAE 171


>BC035055-1|AAH35055.1|  554|Homo sapiens gamma-aminobutyric acid
           (GABA) A receptor, alpha 4 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 9.6
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 492 FRFVRDGTILYDRRSTVSSE 551
           FR +R+GTILY  R T+S+E
Sbjct: 152 FRIMRNGTILYTMRLTISAE 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,896,446
Number of Sequences: 237096
Number of extensions: 2029376
Number of successful extensions: 5870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5870
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)