Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0700
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 34 0.091
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 1.9
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 1.9
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 1.9
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 1.9
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 29 1.9
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 4.5
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical protein
T12G3.2a protein.
Length = 928
Score = 33.9 bits (74), Expect = 0.091
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = -1
Query: 325 TSTRPGTGRIRFPSKPDTPRSSEPSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 146
T P ++R P+ PRSS+ L RS +LP S T + +S SP +P + + +
Sbjct: 845 TMISPPPAKVRPPAVDTYPRSSQFELVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSP 901
Query: 145 RRDISTYIPHLNFQGPQRVSGHRRK 71
+ T IPH+ G + H ++
Sbjct: 902 NQ---TTIPHMYNNGIPMIYEHHQQ 923
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.5 bits (63), Expect = 1.9
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 541 TVE-RRSYRIVPSRTKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHY 365
T+E +R+ R V S KR L RS R S + D E + +R +
Sbjct: 494 TIEVKRTDRWVVSMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNG 551
Query: 364 IKI--LTR*NEHNARTSTRPGTGRIRFPSKPDT 272
+KI LT NE+ TS++PG R+ P+K DT
Sbjct: 552 LKIPQLTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.5 bits (63), Expect = 1.9
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 541 TVE-RRSYRIVPSRTKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHY 365
T+E +R+ R V S KR L RS R S + D E + +R +
Sbjct: 463 TIEVKRTDRWVVSMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNG 520
Query: 364 IKI--LTR*NEHNARTSTRPGTGRIRFPSKPDT 272
+KI LT NE+ TS++PG R+ P+K DT
Sbjct: 521 LKIPQLTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.5 bits (63), Expect = 1.9
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 541 TVE-RRSYRIVPSRTKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHY 365
T+E +R+ R V S KR L RS R S + D E + +R +
Sbjct: 494 TIEVKRTDRWVVSMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNG 551
Query: 364 IKI--LTR*NEHNARTSTRPGTGRIRFPSKPDT 272
+KI LT NE+ TS++PG R+ P+K DT
Sbjct: 552 LKIPQLTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.5 bits (63), Expect = 1.9
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -1
Query: 541 TVE-RRSYRIVPSRTKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHY 365
T+E +R+ R V S KR L RS R S + D E + +R +
Sbjct: 463 TIEVKRTDRWVVSMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNG 520
Query: 364 IKI--LTR*NEHNARTSTRPGTGRIRFPSKPDT 272
+KI LT NE+ TS++PG R+ P+K DT
Sbjct: 521 LKIPQLTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 319 TRPGTGRIRFPSKPDTPRSSE-PSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGT 149
+RP +GR R P+ P+ P+ E P +F N+P + T I L ++ W P A T
Sbjct: 157 SRP-SGRRRLPATPNLPKHGELPQIF-----NIPHANTLISLQLCVNNNWSPRAPGST 208
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
protein C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 338 T*RTNIDQTRHRPHPLPVQT 279
T +++ID T H PHP+ VQT
Sbjct: 904 TLKSSIDITNHLPHPIAVQT 923
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 89 IRTPPQMRCSSRSEPYLPSIGFHGT 15
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,502
Number of Sequences: 27780
Number of extensions: 312252
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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