Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0700
(607 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 4.1
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 7.1
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 7.1
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 7.1
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.1
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 9.4
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 9.4
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 291 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 389
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 291 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 389
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.2 bits (45), Expect = 4.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 331 ARTSTRPGTGRIRFPSKPDTPRSSEPSLFRSYGSNLPT 218
A T+ RPGT + KP P +S + G +P+
Sbjct: 1111 AATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMPS 1148
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 473 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 294
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 293 LPV 285
+PV
Sbjct: 115 VPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 473 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 294
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 293 LPV 285
+PV
Sbjct: 115 VPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 7.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 473 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 294
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 293 LPV 285
+PV
Sbjct: 115 VPV 117
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 7.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 473 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 294
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 290 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 347
Query: 293 LPV 285
+PV
Sbjct: 348 VPV 350
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.0 bits (42), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 495 RFVRDGTILYDRRSTVSSE 551
R +DG ILY R T+ ++
Sbjct: 143 RISQDGDILYSMRLTIKAK 161
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.0 bits (42), Expect = 9.4
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 473 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 294
RK R + D R R S+ I ++ ++ N N+ K+ NI+ P P
Sbjct: 57 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114
Query: 293 LPV 285
+P+
Sbjct: 115 VPI 117
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,937
Number of Sequences: 438
Number of extensions: 3973
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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