Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0700
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07220.1 68414.m00768 expressed protein                             30   1.0  
At2g46320.1 68415.m05761 mitochondrial substrate carrier family ...    29   2.4  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   3.2  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   3.2  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.2  
At5g59510.1 68418.m07458 expressed protein                             28   5.5  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   7.3  

>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 254 ILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTP 78
           +L+  L + F  F   L Y +D  +   +T  G+  EP    H+ P   FS + +  +  
Sbjct: 21  LLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAY 79

Query: 77  PQMRCSSRSEPY 42
             ++CS  S PY
Sbjct: 80  RILQCSYFSCPY 91


>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 361

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 429 DWIRTRVLRPSADLPSRKSCRFR-FVRDGTILYDRRSTVSSELARTRG 569
           D ++TR+   +A +P + SCR   F  + T+++D RS  +  + R  G
Sbjct: 43  DVVKTRLQAQAAGVPYQGSCRLGCFDTNSTLVHDLRSNSAPGMCRITG 90


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 284 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 442
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 70  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 171
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 445 RVRIQSET*DDFRECHIKYIQFLRPH 368
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = -1

Query: 325 TSTRPGTGRIRFPSKPDTPRSSEPSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 146
           +S++P   R  F +KP +  SSEP   RS+ +  PTS     LS  GS+   P     T+
Sbjct: 38  SSSKPVFTR-SFSTKPTSYSSSEPIFRRSFSAK-PTSSKSPFLSRSGSTKC-PVDTSSTS 94

Query: 145 RRDIS 131
           +  IS
Sbjct: 95  KCSIS 99


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 137 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 48
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,279
Number of Sequences: 28952
Number of extensions: 300513
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)