Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0647
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.2  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.2  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.9  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    26   3.9  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    26   3.9  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   5.1  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -2

Query: 435 THEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 256
           TH  RP P  + PL V+++  P   AN  +    P      P      EA  +G  L   
Sbjct: 591 THSSRPTPNASSPLDVRSKQKP-SSANSNAPTPAPTVNTTNPESSTN-EATSVGPAL--- 645

Query: 255 DEPARHLHVHPS-PEFSRSAESIRTPP 178
            EP++  +VH S  E     +S ++ P
Sbjct: 646 -EPSQGANVHKSDSELDNQNQSGKSNP 671


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 577 ARKIRGRPENAGPDPVRNVRRFSE 506
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 257 GTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 138
           GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 24/102 (23%), Positives = 40/102 (39%)
 Frame = -2

Query: 624 YRIVPIAHERNRHDLRLGRSAEGRRTRVRIQSET*DDFRSVILNIYSF*GRIILKY*LAK 445
           Y  VP+  ER    L +    +    R+R       D+ +      S   R +    LA 
Sbjct: 54  YVCVPMTGER-LDSLEIPMMVDNNEDRMRTAYAVTLDYANGTTTGISAHDRALTTRQLAN 112

Query: 444 TNITHEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPICRL 319
             +T   R    P H +P++ R   VL  + ++E    +C+L
Sbjct: 113 PEVTSP-REFNRPGHIVPLRARDGGVLERDGHTEAAVDLCKL 153


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -1

Query: 598 TKPTRLTARKIRGRPENAGPDPVRNVRRFSECHIKYIQFLRPHYIKILTR*NEHN 434
           +KP+R TA K + + ++ GP+  R +  F+      + F +   I I+ R   H+
Sbjct: 354 SKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHD 408


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 174 MRCSSRSEPYLPSI-GFHGTRSLRQNRNLFPDLSAASSGHFGLPRRTLVFKDVGMI 10
           MR +   E Y+  + G H   +  Q  +LF D     + H  L RRT   K   +I
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = -1

Query: 502 HIKYIQFLRPHYIKILTR*NEHNART---STRPGTGASASRPNP---TRPGPQSQSLFRS 341
           H K I FL    I  L    E +A        P + ASAS PNP   TR G +      +
Sbjct: 219 HGKEIPFLGESEIPKLLANVEPSANAHGLGIEPASKASASSPNPQSGTRLGTKESVAPNN 278

Query: 340 YGSNLPTSL 314
            GS+ P SL
Sbjct: 279 EGSSNPPSL 287


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 312 PTLFYRLEALHLGDLLRIWDEPARHLHVHPSPEFSRSAESIRTPPQ 175
           P L+ +LEA    D+  ++++ +  L +   P+FS       T P+
Sbjct: 97  PVLYQQLEASSTNDISTVFEDESSSLPIILHPKFSSMQVRTVTSPK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,929
Number of Sequences: 5004
Number of extensions: 58156
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)