Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0647
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 30 1.2
AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy pro... 29 2.7
AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical ... 29 2.7
AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical ... 29 2.7
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 29 3.6
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 3.6
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 4.8
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 4.8
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 4.8
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 4.8
AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical ... 27 8.3
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 8.3
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 213 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRSLRQNRNL 91
FS S E+ T Q R + S P YLPSIG + T + N+N+
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHTTEFNKNI 53
>AM085500-1|CAJ30198.1| 947|Caenorhabditis elegans autophagy
protein 9 protein.
Length = 947
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>AF101315-4|AAO25988.1| 719|Caenorhabditis elegans Hypothetical
protein T22H9.2b protein.
Length = 719
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical
protein T22H9.2a protein.
Length = 880
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 485 LYIFNMTLRKSSYVSDWIRTRVLRPSADLP 574
+YI++ LR +Y++ I R+L P D+P
Sbjct: 294 IYIYHRILRYKNYMTGMINKRILHPVFDVP 323
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 192 IRTPPQMRCSSRSEPYLPSIGFHGTRSLRQNR 97
I T Q + SS +P+LP++GF GT N+
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGTSPSTSNK 330
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 427 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 311
TST P T S + P P+ P S SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -1
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1220 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1277
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1278 HRALNDLELNSPL-ARSTPNEEYRIP 1302
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 409 TGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 278
T A +P + P +Q LF S+G LP I + SSP
Sbjct: 11 TMAITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -1
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 238 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 295
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 296 HRALNDLELNSPL-ARSTPNEEYRIP 320
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -1
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.3 bits (60), Expect = 4.8
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -1
Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPRTSLT*IFKV 203
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 202 RREYPDTAANAVLFAFRTISPFYRIP 125
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 435 THEHRPDPAPA---HPLPVQTRHAPVLRANP 352
+HEH P PAPA P PVQ +A P
Sbjct: 330 SHEHSPSPAPAPVSSPTPVQQYQQSYSQAQP 360
>AL031624-3|CAA20939.1| 416|Caenorhabditis elegans Hypothetical
protein H16D19.4 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 264 RIWDEPARHLHVHPSPEFSRSAES 193
R+W P R LH +PS ++ RS ++
Sbjct: 168 RLWKTPMRLLHPNPSIQYVRSGQN 191
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 8.3
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 433 ARTSTRPGTGASA-SRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADM 257
A TS+ P G A SR PT + LFR +P T + SSP R A+
Sbjct: 3903 AFTSSSPEVGLEADSRSRPTER--TLRGLFRRSSPTMPEFSTRHV----SSSPTRRRANR 3956
Query: 256 GRTGATSPRTSLT*IFKVRREYPDTAAN 173
G + S +S I + + PD N
Sbjct: 3957 GPVTSVSQGSSAEDILALMQAQPDALEN 3984
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,994,781
Number of Sequences: 27780
Number of extensions: 334503
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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