Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0647
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  VRRGNPKWPEEAAERSGKR 94
           VRR +P W ++  E+  KR
Sbjct: 169 VRREHPFWDDQRVEQEAKR 187


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 87  PDLSAASSGHFGLPRRTLVFK 25
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = -2

Query: 222 SPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRSLRQNRNLFPDLSA 73
           SP  S  +  +R      CS  + P+   + FH  +  + +  L   +SA
Sbjct: 331 SPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSA 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,952
Number of Sequences: 438
Number of extensions: 4516
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)