Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0647
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    31   0.63 
At3g60520.1 68416.m06769 expressed protein                             28   4.4  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    28   5.8  
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265...    28   5.8  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   7.7  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    27   7.7  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   7.7  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 203 PQRVSGHRRKCGALRVPNHISLL*DSMELDRSGRIEISSRTSR 75
           P  ++G    CG  +V NH++LL +S+ LD    I  +S  +R
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNR 84


>At3g60520.1 68416.m06769 expressed protein
          Length = 129

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 370 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGRTGATSPR 230
           G  S+  +RS  S+    +    ++   SS   PAAD G+TG  SPR
Sbjct: 69  GGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPR 115


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 436 NARTSTRPGTGASASRPNPTRPGPQSQS 353
           +++T +    G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446


>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
           At1g08760, At1g08740, At2g29240, At1g35650
          Length = 751

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 382 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 281
           PTRPG +S SL R  G+N PT+ T +  +   SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 393 PVQTRHAPVLRANP----YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWDEPA 244
           P  +RH P+ + +P    Y++     CR PL  L Y     +    LR W  PA
Sbjct: 68  PCHSRH-PLKKVSPETIDYTDGKCQFCRSPLVDLMYHCSICNFSVDLRCWLNPA 120


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 68  EAAERSGKRFLFCLSDRVPWNPIEGRYGSEREEHRICGG 184
           E   ++ KR+   +  R+ W   E + G+E EE  + GG
Sbjct: 696 EGKSKAIKRYGKLMMKRINWEEAERKEGNEDEEEEVNGG 734


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 240 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 151
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,371,722
Number of Sequences: 28952
Number of extensions: 321233
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)