Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0636
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    31   0.14 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.43 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.43 
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   5.3  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.2  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   9.2  

>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -2

Query: 410 SSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFSRVSIKYIQFLR 231
           SS+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F+      + F +
Sbjct: 335 SSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQK 394

Query: 230 PHYIKILTR*NEHNARTSTRPGTGRIRFPS 141
              I I+ R   H+   + R G     FP+
Sbjct: 395 GDIIDIVERSGSHDDWWTGRIGYREGIFPA 424


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 149 SGCGRCRVWSMFVRYVRFSE 208
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 332 ARKIRGRPENAGPDPVRNVRRFSRV 258
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 186 TNIDQTRHRPHPLPVQTRHAPV 121
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 519 FTWTSEHWAEITLRQHPRGPSQCFVLIRQSDSPCP 415
           ++WTS+ W +  + +   GPS     ++ + S  P
Sbjct: 431 YSWTSDRWVKSKIEESLTGPSFSRYELQSAQSVLP 465


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 470 REGHRNALF*LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPD 291
           RE +R + + L    P V+     T+E     ++   H   P R  A      P+ A   
Sbjct: 465 REVYRKSFWKLSEYFPSVQEELTNTLEPS---VLKQLHLANPNRQAASFNFSGPKRAPIR 521

Query: 290 PVRNVRRFSR 261
           P+ N+R FS+
Sbjct: 522 PLSNLRSFSK 531


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 369 HDSVRPPFNGQLRTGTDKGN 428
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,317
Number of Sequences: 5004
Number of extensions: 42011
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)