Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0636
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.57
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.7
05_06_0098 + 25560158-25560925 29 3.1
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 3.1
07_03_0078 - 13147741-13148913 28 4.0
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965... 28 4.0
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 5.3
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 5.3
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 28 5.3
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 5.3
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 5.3
03_05_0377 + 23613181-23613342,23614469-23614501,23614606-236148... 28 5.3
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 9.3
06_03_0783 - 24546403-24546765,24547202-24547262,24547899-245480... 27 9.3
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 186 TNIDQTRH------RPHPLPVQTRHAPVLRANP 106
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 156 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 67
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>05_06_0098 + 25560158-25560925
Length = 255
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 165 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLF 55
HRP P P + P L +P + V I P PT F
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTF 67
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 162 RPHPLPVQTRHAPVLRANPYSEVTDP 85
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 292 SGPAFSGLPRIFLAVSRVGFVSCAI 366
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
>03_05_0082 -
20595935-20596039,20596103-20596189,20596468-20596586,
20596686-20596924,20597044-20597100,20597203-20597909,
20599827-20600192
Length = 559
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 244 IYLIDTRENRLTFRTGSGPAFSGLPRIF 327
IY++ +R RLT+ S AFSGLP F
Sbjct: 291 IYIVTSRRCRLTWTGFSMLAFSGLPDFF 318
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 188 ARTSTRPGTGRIRFPSKPDTPRSSE 114
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 377 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 505
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 150 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLF*RLEAL 37
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 176 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 90
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 377 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 505
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>03_05_0377 +
23613181-23613342,23614469-23614501,23614606-23614879,
23615105-23615585,23616174-23616846
Length = 540
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 510 TSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPC 412
T E + E+ P G S CF Q SPCPC
Sbjct: 236 TGERYCEVAC---PCGVSFCFNCAGQVHSPCPC 265
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 204 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPY 103
+K + N+D RP P PV LRA PY
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPY 34
>06_03_0783 - 24546403-24546765,24547202-24547262,24547899-24548004,
24548118-24551600,24553134-24553179
Length = 1352
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 298 PAFSGLPRIFLAVSRVGFVSCAIGTILYD 384
P FS P FL ++ + F+SC T+L D
Sbjct: 1005 PGFSDSPSTFLRITGMEFISCPNLTLLPD 1033
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,998
Number of Sequences: 37544
Number of extensions: 319198
Number of successful extensions: 1070
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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