Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0636
(528 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.1
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 29 2.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 2.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 2.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 2.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 2.7
Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical pr... 28 3.6
AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protei... 28 3.6
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 8.3
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 27 8.3
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 195 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 82
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 410 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 508
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 410 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 508
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 121 PQSQSLFRSYGSNLPTSFTYIILTTRGSSP 32
P +Q LF S+G LP F I T SSP
Sbjct: 25 PSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 212 LTR*NEHNARTSTRPGTGRIRFPSKPDT 129
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 212 LTR*NEHNARTSTRPGTGRIRFPSKPDT 129
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 212 LTR*NEHNARTSTRPGTGRIRFPSKPDT 129
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 212 LTR*NEHNARTSTRPGTGRIRFPSKPDT 129
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical
protein T11F9.5 protein.
Length = 265
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 124 GPQSQSLFRSYGSNLPTSFTYIIL 53
GP++ FR+ GS +P+ F Y+++
Sbjct: 204 GPKNSKYFRTMGSQIPSYFDYLMI 227
>AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protein
protein.
Length = 82
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 124 GPQSQSLFRSYGSNLPTSFTYIIL 53
GP++ FR+ GS +P+ F Y+++
Sbjct: 48 GPKNSKYFRTMGSQIPSYFDYLMI 71
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 170 PGTGRIRFPSKPDTPRSSEPILIPKLRI 87
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 336 KSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 428
++ R +F + H + PP G++R D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,126,533
Number of Sequences: 27780
Number of extensions: 247494
Number of successful extensions: 662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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