Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0636
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   1.5  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   7.8  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   7.8  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    27   7.8  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 170 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 75
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 210 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 85
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 210 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 85
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 146 PSKPDTPRSSEPILI-PKLRIQFADFLYLHYSND*RLFT 33
           PS P+T  S+E  L+ P+L   F D++ L Y    +LFT
Sbjct: 22  PSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,806
Number of Sequences: 28952
Number of extensions: 234045
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)