Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0635
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   2.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.9  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 253 NFQGPQRVSGHRRKC 209
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 125 PDLSAASSGHFGLPRRTLVFKDEG 54
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 253 NFQGPQRVSGHRRKC 209
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 171 RIPWNSNAQAEKKTLPGPLG 112
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 449 HRPHPLPVQTRHAPVLRANPYS 384
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 272 PRTSLTEFSRSAESIRTPPQMRCSSRS 192
           P T L++     +   TPP + CS  S
Sbjct: 44  PETELSDSDCDLDVTGTPPPLDCSKNS 70


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 427 SKPDTPRSSEP 395
           SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 11  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 121
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 11  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 121
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,920
Number of Sequences: 336
Number of extensions: 2874
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)