Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0635
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.43
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 1.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 2.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.0
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 5.3
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 5.3
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 7.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 7.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 9.2
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 9.2
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 29.1 bits (62), Expect = 0.43
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 433 SGCGRCRVWSMFVRYVRFSE 492
+GCG+ VW +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 160 PWNPIEGRYGSEREEHRICGGVRILSADLENSVRDVRGDVAP 285
P+ P+EG Y + ++ HRI R A LE +R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = -2
Query: 440 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 276
HP ++ R+ P+ N Y+ + + L + L + + +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313
Query: 275 -SPRTSLTEFSRSAESIRTP 219
SP+ ++ ++ +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 4.0
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -1
Query: 372 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHRIFKVRREYPDTAANAVLFAF 193
S TSL+ R S+P R D G+++ +TYIPH K ++ +A
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269
Query: 192 RTISPFYRIP 163
R++S Y+ P
Sbjct: 270 RSVSRSYQSP 279
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -2
Query: 212 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 470 TNIDQTRHRPHPLPVQTRHAPV 405
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 358 FPYLHYSID*RLFTLETCCGYGYEPARHL 272
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 259 SPNFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 98
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -2
Query: 389 YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQM 210
Y + + L +P+L RL A+HLG +I ++ +P +T ++ + TPP +
Sbjct: 1093 YKAKSSLLVTLKIPSLIPRLRAIHLGK-GKIVIK---KAPLKQITSKTKEKSTSPTPPSI 1148
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 71 RVFDGVTQSGLKTPPRGPGRV 133
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 7 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 165
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 71 RVFDGVTQSGLKTPPRGPGRV 133
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 7 PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 123
P+PI P+ ++ P+S TS R P P+D S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 176 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,063
Number of Sequences: 5004
Number of extensions: 49423
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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