Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0635
(528 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 29 1.5
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.6
At5g42370.1 68418.m05159 expressed protein 29 2.6
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 2.6
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 3.4
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 3.4
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 3.4
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi... 28 4.5
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 4.5
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 4.5
At5g22390.1 68418.m02612 expressed protein 27 5.9
At5g61910.3 68418.m07772 expressed protein 27 7.8
At5g61910.2 68418.m07771 expressed protein 27 7.8
At5g61910.1 68418.m07770 expressed protein 27 7.8
At5g60000.1 68418.m07524 hypothetical protein 27 7.8
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 27 7.8
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 27 7.8
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 27 7.8
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 27 7.8
At2g05210.1 68415.m00549 expressed protein 27 7.8
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 7.8
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 7.8
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 454 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 359
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 241 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 107
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 180 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 70
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 43 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 174
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 236 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 138
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 377 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 228
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 377 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 228
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
protein
Length = 964
Score = 27.9 bits (59), Expect = 4.5
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Frame = -1
Query: 408 GPQSQSLFRSYGSNLPTSLTYIILSTRGSS---PWRPAADMGTNRRDISTYIPHRIFKVR 238
G Q Y S P S +Y T GS+ P P A G +S Y P R +V
Sbjct: 519 GSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVN 578
Query: 237 REYPDTAAN 211
YP N
Sbjct: 579 MRYPAATRN 587
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 463 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 463 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 344
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 115 ERSGKSFLFCLSVRVPWNPIEG 180
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At5g61910.3 68418.m07772 expressed protein
Length = 742
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 272 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 253 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 286
>At5g61910.2 68418.m07771 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 272 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At5g61910.1 68418.m07770 expressed protein
Length = 738
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 272 PRTSLTEFSR-SAESIRTPPQMRCSSRSEPYLPS 174
PRTSL + S + TPP+ S+ ++PY P+
Sbjct: 249 PRTSLLQHSYFRQDDYTTPPRESLSNLNQPYYPT 282
>At5g60000.1 68418.m07524 hypothetical protein
Length = 149
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -1
Query: 330 RGSSPWRPAADMGTNRRDISTYIPHRIFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 154
+GS PW+P +GT R+ + + + D T + F FYR WN+
Sbjct: 78 QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135
Query: 153 NAQAEKKTLP 124
N + K P
Sbjct: 136 NKRIWDKVFP 145
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 494 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 369
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 494 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 369
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 217 GGVRILSADLENSVRDVRGDVAPVRTH 297
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 207 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 28
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 27 GFRNRNRI 4
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 236 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 81
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 163 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 44
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 163 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 44
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,605,890
Number of Sequences: 28952
Number of extensions: 281566
Number of successful extensions: 890
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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