Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0633
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    52   4e-08
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    41   1e-04
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    39   4e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    36   0.005
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   1.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.9  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   3.2  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.9  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +2

Query: 68  DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 160
           DR  KNG+ EYY+KW GY   DNTWEPE NL
Sbjct: 30  DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +2

Query: 62  VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 178
           +LD R+K      +YYLKW+GY D  DNTW + ED   C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +2

Query: 80  KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQXXXXXXXXXXXXXXMSKTDKDSK- 250
           K G  EY LKW+GY D  DNTW  E D   C  LI+                +T +  K 
Sbjct: 94  KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHGGRPEPSKRKRTARPKKP 153

Query: 251 KLNQPQP 271
           +  +P P
Sbjct: 154 EAKEPSP 160



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 433 PAKQANVRCPQVVIQFYEERL 495
           P+   N +CPQ ++QFYE  L
Sbjct: 302 PSTITNKKCPQKMLQFYESHL 322


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 62  VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 160
           ++D ++ +NG ++ Y ++W  YS   +TWEP +NL
Sbjct: 13  IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 412 TDEADLVPAKQANVRCPQVVIQFYEE 489
           T+++ L PAKQ N + P+ + Q Y+E
Sbjct: 75  TEDSSLSPAKQENEKSPEGIEQKYQE 100


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 95  EYYLKWKGYSDEDNTWEPEDNL 160
           E+ +KW  +S    TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 227 SKTDKDSKKLNQPQPHLISKVQRKPKVMTRKHLVLIVD 340
           SK  KD+  LN P  HLI+ V R  K  +  +L L +D
Sbjct: 461 SKIYKDNPSLNPPSWHLITLVHRNEK-SSLPNLELYID 497


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  KNGVLEYYLKWKGYSDEDNTWEPED 154
           + G  EY++KW+    ++ TWE  D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 95  EYYLKWKGYSDEDNTWEPEDNL 160
           +Y +KW+  S   NTWE    L
Sbjct: 231 QYLIKWQEVSHLHNTWEDYSTL 252


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 434 GTRSASSVPCHFMRNMSSPLLSVAPIIFSGSNPRSKPDXXXXXXXXXXAPLRSGVAAADL 255
           G  S   +P   M N+SSPL++ +P   SG NP  +P             +    + +DL
Sbjct: 401 GPNSIYKIPSASMVNLSSPLVT-SP---SGLNPTGRPSRFGGRVRGNPLTMNKAGSVSDL 456

Query: 254 AS 249
            S
Sbjct: 457 LS 458


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 399 HEEHEFTTTIRSANY 355
           H +H F TTI S+NY
Sbjct: 457 HHKHPFLTTIGSSNY 471


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 161 QDYPLVPMYYLHHC 120
           QD PL+  +YL HC
Sbjct: 445 QDVPLIKHWYLEHC 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,303
Number of Sequences: 5004
Number of extensions: 30387
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)