Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0633
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 50 9e-07
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 50 9e-07
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 48 3e-06
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 46 2e-05
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 44 7e-05
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 36 0.020
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 34 0.079
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 31 0.42
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical ... 27 6.9
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 9.1
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 50.4 bits (115), Expect = 9e-07
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +2
Query: 62 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 181
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +1
Query: 355 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 495
IIG T + GEL FL K+ D L+P ++ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 349 EKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERLHGTHRTR 516
EK++ + G + +KWQG E++ N++C +++ ++ +E T R R
Sbjct: 40 EKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKEAAKRTTRKR 95
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 50.4 bits (115), Expect = 9e-07
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +2
Query: 62 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 181
VL++R+ G EYY+KW+G+ + + +WEP +NL C +IQ
Sbjct: 42 VLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQ 81
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +1
Query: 355 IIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 495
IIG T + GEL FL K+ D L+P ++ANVR P VI+FYE RL
Sbjct: 125 IIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 349 EKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERLHGTHRTR 516
EK++ + G + +KWQG E++ N++C +++ ++ +E T R R
Sbjct: 40 EKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYEKEAAKRTTRKR 95
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 48.4 bits (110), Expect = 3e-06
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +2
Query: 62 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLIQ 181
+L+ R K G E+Y+KW GY N+WEP++N+ P LI+
Sbjct: 13 ILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIE 52
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1
Query: 337 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 495
G + + I+G T GEL FL K+ D A L+PAK+ N R P VI++YE +L
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYPSQVIRYYESKL 165
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLI 178
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 489
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1
Query: 337 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEERL 495
G + + I+G T GEL FL K+ D A L+PAK+ N R P VI++YE +L
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYPSQVIRYYESKL 165
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLI 178
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 489
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLI 178
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 337 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 456
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 489
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLI 178
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 337 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 456
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 489
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 44.0 bits (99), Expect = 7e-05
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 62 VLDRRI-KNGVLEYYLKWKGYSDEDNTWEPEDNLDCPDLI 178
VLD+R K G E+ ++W+G+ + D++WEP +NL C +++
Sbjct: 24 VLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEML 63
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 337 GLEPEKIIGATDSSGELMFLMKWQGTDEADLVPAKQANVR 456
G + + I+G T GEL FL K+ D A L+PAK+ N R
Sbjct: 114 GKQLKCIVGLTKGPGELHFLCKF-SDDTARLLPAKEVNSR 152
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 349 EKIIGA-TDSSGELMFLMKWQGTDEADLVPAKQANVRCPQVVIQFYEE 489
EK++ T +G FL++WQG E+D + N++C +++ +F E
Sbjct: 22 EKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFERE 69
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +2
Query: 68 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNLD-CPDL 175
D+R ++ Y + W+GY ++ TWEPE+NL+ C +L
Sbjct: 42 DKR-RHSKYAYLVHWRGYDWKERTWEPEENLENCEEL 77
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 35.9 bits (79), Expect = 0.020
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +2
Query: 62 VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 160
+L ++ + +L ++W GY +++TWEPE++L
Sbjct: 29 ILAHKVTDNLLVLQVRWLGYGADEDTWEPEEDL 61
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 33.9 bits (74), Expect = 0.079
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 98 YYLKWKGYSDEDNTWEPEDNLDCPDLI 178
+ +KW GY +++ TWEPE N+ PD +
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI--PDSV 119
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 95 EYYLKWKGYSDEDNTWEPEDNL 160
++++KW G+S NTWE E++L
Sbjct: 238 QFFVKWTGWSHLHNTWESENSL 259
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 95 EYYLKWKGYSDEDNTWEPE 151
EY +KW G D TWE E
Sbjct: 333 EYLIKWSGLPYSDCTWEDE 351
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 432 YKICFICSLPFHEEHEFTTTIRSANYFFWF 343
+ I F SL FHE EF T + S FF+F
Sbjct: 246 FGIAFHGSLIFHETVEFATIVLSVLAFFFF 275
>AL132859-6|CAB60493.3| 324|Caenorhabditis elegans Hypothetical
protein Y39C12A.7 protein.
Length = 324
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 178 YKIWTIKIILWFPCIIFITVSFPFQVIFQXTILNAPVQNFFNRK 47
+ I+ I II C F T +PF V+F I++ + N N K
Sbjct: 123 FLIYLISIISVLVCTQFSTTFYPFLVLFMSNIISY-IVNIINYK 165
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 95 EYYLKWKGYSDEDNTWEPED 154
+Y +KWK S E TWE +D
Sbjct: 518 DYLVKWKELSYEHATWERDD 537
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 95 EYYLKWKGYSDEDNTWEPED 154
+Y +KWK S E TWE +D
Sbjct: 518 DYLVKWKELSYEHATWERDD 537
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 95 EYYLKWKGYSDEDNTWEPED 154
+Y +KWK S E TWE +D
Sbjct: 518 DYLVKWKELSYEHATWERDD 537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,129
Number of Sequences: 27780
Number of extensions: 171548
Number of successful extensions: 561
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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