Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0633
         (554 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    38   5e-05
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    29   0.042
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 62  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 181
           +L ++   GV  Y +KWK +  + NTWEP  NL +C D+++
Sbjct: 249 ILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILE 289


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 0.042
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 470 TTCGHRTLACFAG-TRSASSVPCHFMRNMSSPLLS 369
           TTC   T+ CF G  R +    C  ++ +  P+LS
Sbjct: 290 TTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 438 CWYKICFICSLP 403
           CW+KIC+  + P
Sbjct: 489 CWWKICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 438 CWYKICFICSLP 403
           CW+KIC+  + P
Sbjct: 542 CWWKICWTITTP 553


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -3

Query: 420 FICSLPFHEEHEFTTTIRSANYF 352
           FIC  PFH +       + ++Y+
Sbjct: 280 FICWAPFHTQRLLYVYAQESDYY 302


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 131 DNTWEPEDNLDC 166
           D+TW P D L+C
Sbjct: 162 DHTWWPYDILNC 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,797
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)