Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0633
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    42   3e-04
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    36   0.018
At2g47450.1 68415.m05922 chloroplast signal recognition particle...    33   0.13 
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    31   0.68 
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794...    29   2.1  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    28   3.6  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    28   3.6  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   4.8  
At3g48910.1 68416.m05343 expressed protein                             27   6.4  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    27   6.4  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    27   8.4  
At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family p...    27   8.4  
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    27   8.4  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    27   8.4  

>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = +2

Query: 71  RRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 160
           +R++ G ++Y +KW+G+ +  NTWEP +NL
Sbjct: 116 KRVRKGKVQYLIKWRGWPETANTWEPLENL 145


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 68  DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 181
           D+  KNG L++ + WKGY  +++TWE  + L +C D I+
Sbjct: 851 DKTGKNG-LKFKVHWKGYRSDEDTWELAEELSNCQDAIR 888


>At2g47450.1 68415.m05922 chloroplast signal recognition particle
           component (CAO) nearly identical to CAO [Arabidopsis
           thaliana] GI:4102582
          Length = 373

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 92  LEYYLKWKGYSDEDNTWEPEDNLD 163
           +EY +KW   SD   TWEP+DN+D
Sbjct: 337 IEYLVKWTDMSDA--TWEPQDNVD 358


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 92  LEYYLKWKGYSDEDNTWEPEDNL-DCPDLIQ 181
           L+  ++WKGY+   +TWEP   L +C + ++
Sbjct: 360 LQLMVRWKGYNSSYDTWEPYSGLGNCKEKLK 390


>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
           Domain of Unknown function
          Length = 350

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 404 GKEQMKQILYQQNKLMCGAHK*LFNFMKKGSMAHTAL 514
           GKE+ K+++ Q  ++M G H   F+F+ +G     A+
Sbjct: 289 GKEKQKKLMNQSLEVMSGTHSNSFDFLLEGLTPQEAM 325


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 104 LKWKGYSDEDNTWEPEDNLDCPDL 175
           L W GY D   TW   D LD   L
Sbjct: 605 LTWNGYEDGTPTWHTADELDLSQL 628


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to SP|O14647
           Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
           {Homo sapiens}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00385: 'chromo' (CHRromatin
           Organization MOdifier)
          Length = 1722

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 62  VLDRRIKNG----VLEYYLKWKGYSDEDNTWEPE 151
           + DR  K+G    V EY +KW+G S  + TWE +
Sbjct: 539 IADRISKDGLGDVVPEYLVKWQGLSYAEATWEKD 572


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 372 IRSANYFFWF*STIKTRCFLVITFGFLCTFE 280
           +R+  +FF F ST  T C  V  F +L  F+
Sbjct: 185 VRNYRFFFMFISTSTTLCIYVFAFSWLNIFQ 215


>At3g48910.1 68416.m05343 expressed protein 
          Length = 224

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 352 KIIGATDSSGELMFLMKWQGTD--EADLVPAKQANVRCPQVVIQFYEE 489
           +II      G   F + W   +  E+ +VPA      CP+ +I+F E+
Sbjct: 9   EIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEK 56


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 62  VLDRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 160
           +L  R ++G LEY +K+K  S ++  WE E ++
Sbjct: 195 ILACREEDGELEYLVKYKELSYDECYWESESDI 227


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 80  KNGVLEYYLKWKGYSDEDNTWE 145
           K G  E Y+KW G + ++ TWE
Sbjct: 599 KEGNQEAYVKWTGLAYDECTWE 620


>At4g36720.1 68417.m05210 abscisic acid-responsive HVA22 family
           protein low similarity to SP|Q00765 Polyposis locus
           protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
           profile PF03134: TB2/DP1, HVA22 family
          Length = 227

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 181 LYKIWTIKIILWFPCIIFITVSFPFQVIFQXTILNAPVQNFFNR 50
           L +++T KII WFP  ++  V F F V  Q   +    Q + N+
Sbjct: 80  LVEVFTDKIISWFP--LYYHVKFAFLVWLQLPTVEGSKQIYNNQ 121


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 77  IKNGVLEYYLKWKGYSDEDNTWEPEDNL 160
           +K G L   ++W  Y D  +TWEP + L
Sbjct: 399 LKRG-LYLKVRWLNYDDSHDTWEPIEGL 425


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 157 IILWFPCIIFITVSFPFQVIFQXTILNAPVQNF 59
           ++L   C +F+T++FPF + F  +I      NF
Sbjct: 39  LLLCSICFLFLTLNFPFTIEFTASIPRTCDHNF 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,355,518
Number of Sequences: 28952
Number of extensions: 156044
Number of successful extensions: 382
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)