Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86NR4 Cluster: RE29053p; n=5; Diptera|Rep: RE29053p - ...    47   1e-04
UniRef50_A7RM15 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ...    42   0.005
UniRef50_Q9Y450 Cluster: HBS1-like protein; n=43; Euteleostomi|R...    38   0.077
UniRef50_Q5KFJ4 Cluster: Translation release factor, putative; n...    37   0.13 
UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor...    36   0.18 
UniRef50_UPI0000D55B6A Cluster: PREDICTED: similar to CG1898-PA;...    35   0.41 
UniRef50_Q07089 Cluster: SUP35 protein; n=3; Saccharomyces cerev...    34   0.95 
UniRef50_P05453 Cluster: Eukaryotic peptide chain release factor...    34   0.95 
UniRef50_Q8IHT6 Cluster: Putative uncharacterized protein; n=3; ...    32   2.9  
UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor...    32   2.9  
UniRef50_P39933 Cluster: Transcription factor IIIA; n=4; Sacchar...    32   3.8  
UniRef50_O35197 Cluster: Putative pheromone receptor; n=14; Muri...    31   8.9  

>UniRef50_Q86NR4 Cluster: RE29053p; n=5; Diptera|Rep: RE29053p -
           Drosophila melanogaster (Fruit fly)
          Length = 670

 Score = 47.2 bits (107), Expect = 1e-04
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           ETSRPICIERY D KELGRVMLR
Sbjct: 633 ETSRPICIERYADFKELGRVMLR 655



 Score = 33.1 bits (72), Expect = 1.7
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -2

Query: 368 KPRCLGNNSVAVVEMRPAGP 309
           KPRCLGNNS A+VE+  + P
Sbjct: 618 KPRCLGNNSCALVELETSRP 637


>UniRef50_A7RM15 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 473

 Score = 41.5 bits (93), Expect = 0.005
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           +TSRP+C+E YKD K+LGR MLR
Sbjct: 437 QTSRPVCVELYKDYKDLGRFMLR 459


>UniRef50_Q9Y450 Cluster: HBS1-like protein; n=43; Euteleostomi|Rep:
           HBS1-like protein - Homo sapiens (Human)
          Length = 684

 Score = 37.5 bits (83), Expect = 0.077
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           +T RPI +E YKD KELGR MLR
Sbjct: 646 QTQRPIALELYKDFKELGRFMLR 668


>UniRef50_Q5KFJ4 Cluster: Translation release factor, putative; n=3;
           Eukaryota|Rep: Translation release factor, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 757

 Score = 36.7 bits (81), Expect = 0.13
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           ETS PICIER++D K LGR  LR
Sbjct: 702 ETSAPICIERFEDYKMLGRFTLR 724


>UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor
           GTP-binding subunit; n=2; Zygosaccharomyces rouxii|Rep:
           Eukaryotic peptide chain release factor GTP-binding
           subunit - Zygosaccharomyces rouxii (Candida mogii)
          Length = 662

 Score = 36.3 bits (80), Expect = 0.18
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLRAQ 250
           ET RP+C+E Y+D  +LGR  LR Q
Sbjct: 624 ETERPVCVETYQDYPQLGRFTLRDQ 648


>UniRef50_UPI0000D55B6A Cluster: PREDICTED: similar to CG1898-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG1898-PA - Tribolium castaneum
          Length = 792

 Score = 35.1 bits (77), Expect = 0.41
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           + SRPI +E Y D KELGR MLR
Sbjct: 754 QVSRPIALELYSDCKELGRFMLR 776


>UniRef50_Q07089 Cluster: SUP35 protein; n=3; Saccharomyces
           cerevisiae|Rep: SUP35 protein - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 224

 Score = 33.9 bits (74), Expect = 0.95
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLRAQ 250
           ET  P+C+E Y+D  +LGR  LR Q
Sbjct: 186 ETEAPVCVETYQDYPQLGRFTLRDQ 210


>UniRef50_P05453 Cluster: Eukaryotic peptide chain release factor
           GTP-binding subunit; n=50; Ascomycota|Rep: Eukaryotic
           peptide chain release factor GTP-binding subunit -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 685

 Score = 33.9 bits (74), Expect = 0.95
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLRAQ 250
           ET  P+C+E Y+D  +LGR  LR Q
Sbjct: 647 ETEAPVCVETYQDYPQLGRFTLRDQ 671


>UniRef50_Q8IHT6 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 861

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 25  Y*HYIINNKLYFKTVHYCRLFTRAKLKCPN-ITIFLIYHIFN 147
           Y H  + NK+YFKT+    +     LK  N +TIFL++HI N
Sbjct: 131 YIHKHMENKIYFKTL--TNIIQNFALKNKNFVTIFLVHHIKN 170


>UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor
           GTP-binding subunit; n=2; Schizosaccharomyces pombe|Rep:
           Eukaryotic peptide chain release factor GTP-binding
           subunit - Schizosaccharomyces pombe (Fission yeast)
          Length = 662

 Score = 32.3 bits (70), Expect = 2.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLRAQ 250
           ET  P+C+ER++D + +GR  LR Q
Sbjct: 624 ETQTPVCMERFEDYQYMGRFTLRDQ 648


>UniRef50_P39933 Cluster: Transcription factor IIIA; n=4;
           Saccharomycetaceae|Rep: Transcription factor IIIA -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 429

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 194 SDQSCADNISDKACCYGDTCARNITRPSSLTSLYLSMHMGL 316
           S +S + N      C  D C +  TRPS LT   LS+H GL
Sbjct: 37  STRSSSSNRPKTYFCDYDGCDKAFTRPSILTEHQLSVHQGL 77


>UniRef50_O35197 Cluster: Putative pheromone receptor; n=14;
           Murinae|Rep: Putative pheromone receptor - Mus musculus
           (Mouse)
          Length = 436

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 215 NISDKACCYGDTCARNITRPSSLTSLYLSMHMGLLVSF 328
           N  +  C   D+CA  +T PS  TSL L+MH  + + F
Sbjct: 128 NFVNYFCYLDDSCAIGLTGPSWKTSLKLAMHSSMPLVF 165


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,804,802
Number of Sequences: 1657284
Number of extensions: 4927134
Number of successful extensions: 10018
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10017
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)