Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    32   0.025
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   1.2  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    26   2.1  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    26   2.1  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    26   2.1  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   3.7  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   3.7  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    24   6.5  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 32.3 bits (70), Expect = 0.025
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLRAQ 250
           ET  P+C+ER++D + +GR  LR Q
Sbjct: 624 ETQTPVCMERFEDYQYMGRFTLRDQ 648


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 189  DYYNLNIQLKDLLLIEDVIN*KYGYVWTF*LCTRE 85
            DY++LN  +    L +DV      YVW   +CT E
Sbjct: 1022 DYFDLNFSIIAKHLTKDVFVTVMSYVWDEVVCTTE 1056


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 SRPICIERYKDVKELGRVMLR 256
           S+P+C+E + D   LGR  +R
Sbjct: 405 SKPMCVEAFTDYAPLGRFAVR 425


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 SRPICIERYKDVKELGRVMLR 256
           S+P+C+E + D   LGR  +R
Sbjct: 405 SKPMCVEAFTDYAPLGRFAVR 425


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 SRPICIERYKDVKELGRVMLR 256
           S+P+C+E + D   LGR  +R
Sbjct: 405 SKPMCVEAFTDYAPLGRFAVR 425


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 180 NLNIQLKDLLLIEDVIN*KYGYVWTF 103
           +LN  LK +  +E   N KY Y W F
Sbjct: 82  DLNDLLKSIRKLEKTFNHKYHYGWVF 107


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 288 LYISRCIWACWSH 326
           +YIS C  ACW H
Sbjct: 229 VYISLCALACWDH 241


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -1

Query: 174 NIQLKDLLL----IEDVIN*KYGYVWTF 103
           N  +KD L+    +ED  N +Y Y WTF
Sbjct: 74  NRDIKDALVSIQSVEDRFNHRYHYPWTF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,448
Number of Sequences: 5004
Number of extensions: 21926
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)