Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    30   0.65 
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299...    27   4.6  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    26   8.1  

>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 315 RPICIERYKDVKELGRVMLRAQ 250
           + +C+E + ++K LGRV LR+Q
Sbjct: 617 KEVCVEEFSNLKALGRVFLRSQ 638


>04_03_0107 +
           11328267-11328276,11329059-11329170,11329862-11329907,
           11330185-11330256,11332292-11332303,11332880-11332942,
           11333038-11333192,11333303-11333367,11334645-11334795,
           11335230-11335335,11335440-11335575,11336310-11336374,
           11337003-11337188,11337298-11337399
          Length = 426

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 333 C*NETSRPICIERYKDVKELGRVMLRAQ 250
           C  + +  ICIE + D  +LGR  LR +
Sbjct: 390 CRIQVNNLICIENFSDFPQLGRFTLRTE 417


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 353 GNNSVAVVE----MRPAGPYASRDIKMLRSLVVLCYARRCHHSS 234
           G++++A+ E    M P G   S D+  ++ L+   + RR  HSS
Sbjct: 744 GSSAIALKEHNHRMYPKGKSLSPDMMPMKELIAAAHTRRFSHSS 787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,519
Number of Sequences: 37544
Number of extensions: 124227
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)