Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            42   2e-04
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           29   1.6  
SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      26   8.3  

>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           +TSRP+C+E YKD K+LGR MLR
Sbjct: 45  QTSRPVCVELYKDYKDLGRFMLR 67


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           ET   ICIE++ D +++GR  LR
Sbjct: 522 ETQGVICIEKFSDFQQMGRFTLR 544


>SB_52415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 677

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 191 LSDQSCADNISDKACCYGDTCARNITRPSSLTS-LYLS--MHMGLLVSFQQLPQNYFLSN 361
           L+ QSC  N       +G  C      P   TS L +S  +H+G+ V F +L   YFL +
Sbjct: 117 LATQSCLTN----RLIFGVACLSYPLHPPKRTSELRVSSLLHLGIPVLFNRLSVTYFLES 172

Query: 362 E 364
           E
Sbjct: 173 E 173


>SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 169 TTKRFVTN*RCDKLKIWLCLDILAL 95
           TT+RF  +   D L  W CLD+++L
Sbjct: 205 TTRRFFADQLDDHLSYWDCLDLISL 229


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 359 CLGNNSVAVVEMRPAGPYASRDIKMLRSLVVLCYARRCHHSSRP 228
           C+G  ++      P  P+A R + +  SL  L  +RR  H SRP
Sbjct: 72  CIGRGNLFSAPCNP--PWACRSLCLRASLRRLSSSRRALHISRP 113


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 191  LSDQSCADNISDKACCYGDTCARNITRPSS 280
            +S   C D   D  C +G TC R +   +S
Sbjct: 1721 VSKGKCYDPCDDLQCLHGSTCVRRVNGSAS 1750


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,418
Number of Sequences: 59808
Number of extensions: 154534
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)