Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.50 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   0.87 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   3.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   8.1  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 324 ETSRPICIERYKDVKELGRVMLR 256
           + ++P+C+E +++   LGR  +R
Sbjct: 405 QPTKPMCVEAFQEFPPLGRFAVR 427


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 318 SRPICIERYKDVKELGRVMLR 256
           S+P+C E +++   LGR  +R
Sbjct: 407 SKPMCAEAFQEFPPLGRFAVR 427


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 189 DYYNLNIQLKDLLLIEDVIN*KYGYVWT 106
           +YY  ++ + DLLL+   +  +  Y+W+
Sbjct: 89  NYYLFSLAVSDLLLLISGLPPEIYYIWS 116


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  IINYTSKQYIIVDYSRVQS 100
           +I YTS Q    D+S VQS
Sbjct: 210 VIGYTSNQSDTDDHSSVQS 228


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 299 SMHMGLLVSFQQLPQNYF 352
           S+H   L++  + PQN F
Sbjct: 156 SLHDNKLITMYRFPQNQF 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,686
Number of Sequences: 438
Number of extensions: 1523
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)