Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0621
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    29   0.73 
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    29   1.3  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    28   2.2  
At1g66910.1 68414.m07604 protein kinase, putative similar to rec...    26   9.0  

>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 188 SLSDQSC--ADNISDKACCYGDTCARNITRPSSLTSL 292
           S S +SC   D+ SD +CCYGD  A  I+ P S T L
Sbjct: 384 SPSFKSCLWGDHESDYSCCYGDGFAGKIS-PCSTTEL 419


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 333 C*NETSRPICIERYKDVKELGRVMLRAQ 250
           C  + +  ICIE++ D  +LGR  LR +
Sbjct: 486 CRIQVTNSICIEKFSDFPQLGRFTLRTE 513


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 312 PICIERYKDVKELGRVMLRA 253
           P+C+E + + + LGRV LR+
Sbjct: 631 PVCVETFSESRALGRVFLRS 650


>At1g66910.1 68414.m07604 protein kinase, putative similar to
           receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 666

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 239 YGDTCARNITRPSSLTSL 292
           +G +C+RN++ P+S T+L
Sbjct: 191 FGGSCSRNVSNPASRTAL 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,724,125
Number of Sequences: 28952
Number of extensions: 107139
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)