Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0619
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.5  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   9.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.9  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 571  SPYAY*TSGSSQLLPFCSTRGF 636
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 242 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 117
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 399 WIVHPSKGNVSWARPS*DRLVLPY*WLVVAIVILLSTRGTAVSD 268
           W+++     V + R     L LP   + + I+I L +RGT+ +D
Sbjct: 3   WMINQGHSLVFFPRLENKGLTLPRLLIHIPILIFLQSRGTSPND 46


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 515 WHLLLKTLYTKGSIGRAFAVPMRTEH 592
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 262 PNVRNCGSSRTEQYYYRNDKPSVG 333
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 205 RHNPADGSFAPPAARPRHEPN 267
           RH+PA     P A RPR +P+
Sbjct: 101 RHSPAYRFSTPAAKRPRRQPS 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,727
Number of Sequences: 5004
Number of extensions: 58514
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)