Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0619
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 36 0.029
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.1
05_07_0290 + 29016410-29018920 31 1.1
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 30 1.9
07_03_0846 - 21983581-21986055 29 2.5
06_01_0655 + 4742267-4742531,4743313-4744136 29 2.5
03_05_0183 - 21681673-21682524 29 3.3
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 29 4.4
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 29 4.4
09_04_0235 + 15904891-15905218,15906732-15907594 28 5.9
08_02_1485 - 27466761-27467753 28 5.9
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 5.9
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.7
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 35.9 bits (79), Expect = 0.029
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = -2
Query: 293 VREEPQFRTFGSCLGRAAGGAKLP-SAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 117
+++EP+FR F R G A P +AG+ N + A +++++S K + E SG
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNK-KVNQETAASG---- 745
Query: 116 CDFTSRVSHSKRETRRRSPFGSRRSMLS 33
VS+S R+ + + FGS +S S
Sbjct: 746 ------VSNSTRQKKGKLVFGSNKSSSS 767
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 185 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 51
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>05_07_0290 + 29016410-29018920
Length = 836
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 232 APPAARPRHEPNVRNCGSSRT 294
APP+ARPRH P + N + RT
Sbjct: 17 APPSARPRHAPPLLNAAALRT 37
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +1
Query: 112 SHCLEPPDSRGSTVSISLPDSARLASAL-----EAFRHNPADGSFAPPA--ARPRHEPNV 270
SH EPP S S + A++ + +A R P+ G PA A RH PN
Sbjct: 28 SHSTEPPLSASSAPRRAAAKDAKIGTETPAADGDAARKRPSAGDAPAPAPLADKRHRPNP 87
Query: 271 RNCGSSRTEQYYYRNDKPSVG 333
+ GS ++++ S G
Sbjct: 88 PSSGSRDRDRHHRHGHSHSHG 108
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 43 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 192
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Frame = +1
Query: 43 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 219
++RDP G+R + F +++ E RG ++ PD A +AS R +
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVASQ----RSHAE 184
Query: 220 DGSFAPPAARPRHEPNVRNCGSS---RTEQYYY 309
S PA +P V + G+ T Y Y
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 482 SQAFIATLLFDPSMSALPIIAKQNSPS 402
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -1
Query: 420 EAKFAKRWIVHPSKGNVSWARPS*DRLVLPY*WLVVAIVILL 295
EA A+ VHP+ + R S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 109 KSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPRHEPNVRNCGS- 285
KS L+P G+ ++ L A + ++H P + PAA P VR G
Sbjct: 22 KSGALQPQPPHGAAAAVRL---AYTHDGIAVYKHTPPPPVYQTPAAVAAPSPPVRGNGGA 78
Query: 286 -SRTEQYYYRNDKP 324
+ EQ+ + +P
Sbjct: 79 PASAEQHKRKRGRP 92
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 43 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 219
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 220 DGSFAPP 240
APP
Sbjct: 210 QEKLAPP 216
>08_02_1485 - 27466761-27467753
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 127 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARP 252
PP + G +S +P A LA++L + NPA P + P
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPPPPPTSKLP 80
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 489 LWQPSVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVSWAR--PS*DRL 340
LW+ V S A S G+ C+ + W +HP ++ R P DRL
Sbjct: 1109 LWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHPEHVSILLVRLMPQLDRL 1160
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 194 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 21
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 20 TRASR 6
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,207
Number of Sequences: 37544
Number of extensions: 435499
Number of successful extensions: 1297
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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