Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0619
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54020.2 68414.m06155 myrosinase-associated protein, putative... 31 0.69
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.2
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 1.6
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 30 1.6
At5g43320.1 68418.m05294 casein kinase, putative similar to case... 29 2.8
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 2.8
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 29 2.8
At4g27120.2 68417.m03898 expressed protein 29 3.7
At4g27120.1 68417.m03897 expressed protein 29 3.7
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 28 6.5
At1g63480.1 68414.m07178 DNA-binding family protein contains a A... 28 6.5
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family... 28 6.5
At2g22720.3 68415.m02692 expressed protein 27 8.5
At2g22720.2 68415.m02691 expressed protein 27 8.5
At2g22720.1 68415.m02693 expressed protein 27 8.5
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138... 27 8.5
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 27 8.5
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 8.5
>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
strong similarity to myrosinase-associated proteins
GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
[Brassica napus]; contains InterPro Entry IPR001087
Lipolytic enzyme, G-D-S-L family
Length = 372
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 494 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 387
+ C S + + LL P + L I+ QN P+VGLFT
Sbjct: 1 MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = -2
Query: 269 TFGSCLGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSH 90
+FG LG A+ A + + +AS A S++ SG+ + P ++ + S+
Sbjct: 900 SFGGTLGGASSSASVQMPPILPSASPASVSVSGSGRRRFSETPTAGPTHRE---QPQTSY 956
Query: 89 SKRETRRRSPFGSRRS 42
R RR+ +GS S
Sbjct: 957 RDRAAERRNLYGSSTS 972
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 HCLEPPDSR-GSTVSISLPDSARLASALEAFRHNPADGSFAPPA 243
HCL PP + SI+LP S+ ++ + P FAPPA
Sbjct: 1162 HCLPPPTAPLAPAQSIALPPSSITRPSMPSHPSLPLQPGFAPPA 1205
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 503 VVLFWHLLLKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAEL 652
VV+F + LL LYT+ G + +P E + +A F P++ V+ +
Sbjct: 282 VVVFHNYLLPILYTEFDAGNFYVIPGSPEEVCKAKNLEFPPQKDDVVISI 331
>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
kinase I (CKI2) [Arabidopsis thaliana]
gi|1103322|emb|CAA55397; contains protein kinase domain,
Pfam:PF00069
Length = 480
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 178 RLASALEAFRHNPADGSFAPPA--ARPRHEPNVRNCGSSRTEQYYYRNDKP 324
R + ALEA+ GS A +RPR NV T Q Y R ++P
Sbjct: 340 RFSGALEAYARRNGSGSGVVQADRSRPRTSENVLASSKDTTPQNYERVERP 390
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 649 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 536
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +1
Query: 187 SALEAFRHNPADGSFAPPAARPRHEPNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSSP 366
SAL +P + A P P+ R+ + R RN KP V N PVSR P
Sbjct: 806 SALRNREASPRMPNLAEERLNP--SPSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFP 862
Query: 367 AHVP 378
A VP
Sbjct: 863 ARVP 866
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -2
Query: 293 VREEPQFRTFGSCLGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 117
V E PQ + + + RA GG ++ AS + +++ E+G + E+GG++ +
Sbjct: 35 VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93
Query: 116 CDFTSRVSHSKRETRRRSPFGSRRS 42
+RE +R++ +R S
Sbjct: 94 ASKKKEKKRQEREAQRQAEEATRES 118
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -2
Query: 293 VREEPQFRTFGSCLGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSK-Q 117
V E PQ + + + RA GG ++ AS + +++ E+G + E+GG++ +
Sbjct: 35 VAEPPQVQPREN-VARAGGGRRMRRRPAASGASSSTSNVQENGSGSEDEDEDEAGGTQAR 93
Query: 116 CDFTSRVSHSKRETRRRSPFGSRRS 42
+RE +R++ +R S
Sbjct: 94 ASKKKEKKRQEREAQRQAEEATRES 118
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 22 KKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLP---DSARLASA 192
KKKT S L G + E E+ ++K +C + ++ S V +L D A+ A++
Sbjct: 19 KKKTASDSLLSNKGQGKNN---EAES-VLKENCQDDKQTKSSPVCETLERDMDEAKGAAS 74
Query: 193 LEAFRHNPADGSFAPPAARPRHEP 264
L+ + A S +RPR+EP
Sbjct: 75 LKDIDQSVASESDLAGGSRPRNEP 98
>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 361
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 263 GSCLGRAAGGAKLPSAGLCLNASKAEASLAESGKDML 153
GS L GG++ + GL ++ S+ + S+ G DML
Sbjct: 225 GSYLVNEEGGSRSRTGGLSVSLSRPDGSIIAGGVDML 261
>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 217
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +1
Query: 127 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPRHEPNVRNCGSSRTEQYY 306
PP ST + P + +S R P FAPP + P+ + S + Y
Sbjct: 46 PPLKLKSTPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPY 104
Query: 307 YRNDKPSVG 333
+R+ P G
Sbjct: 105 FRSSSPRAG 113
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 130 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPRHEPNVRNCGSSR 291
P S GS + S P ++R ASA + PA PA+ P + GS R
Sbjct: 277 PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 328
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 130 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPRHEPNVRNCGSSR 291
P S GS + S P ++R ASA + PA PA+ P + GS R
Sbjct: 380 PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 431
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 130 PDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPRHEPNVRNCGSSR 291
P S GS + S P ++R ASA + PA PA+ P + GS R
Sbjct: 48 PASSGSQMQNSRPQNSRPASAGSQMQQRPASSGSQRPASSGSQRP--ASSGSQR 99
>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 568
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 346 VSRRSSPAHVPF*WVNNPTLGEFCFAMIGRADIEGSKSNVAMNAWLPQ 489
V RR SP V +P + + + ++ AD+ GS NV M AW P+
Sbjct: 97 VYRRGSPGSV----YRSPKVFKRLWPVM-EADVNGSSHNVLMEAWKPR 139
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 169 DSARLASALEAFRHNPADGSFAPPAARPRH 258
D + ALE +RH A+ FAP + RH
Sbjct: 228 DEGNVDEALEVYRHILANAPFAPSSVTYRH 257
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 193 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 53
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,547
Number of Sequences: 28952
Number of extensions: 323724
Number of successful extensions: 898
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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