Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0611
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.3  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.0  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   7.0  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 630 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 529
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 261 LSCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 133
           + C    A  +  +S G +VHA  RAA    +  A  CL   K
Sbjct: 52  IPCLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 513  SPYAY*TSGSSQLLPFCSTRGF 578
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 175 TTGRSAECMNQMSETAVPLVLSSITIARQAISRVKLTCL 291
           T  R+AE + +   + +  +++   ++  AI RVKL+C+
Sbjct: 251 TLVRAAEFVKEHGASKIYALVTHCVLSGDAIERVKLSCI 289


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 204 PNVRNCGSSRTEQYYYRTTSHQ*GK 278
           P V N GSSRT+ +Y R      GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,351
Number of Sequences: 5004
Number of extensions: 51281
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)