Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0611
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 2.4
03_05_0183 - 21681673-21682524 29 3.1
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 29 3.1
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.1
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 29 4.1
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509... 28 5.4
10_08_0774 + 20478203-20479393 28 7.2
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 28 7.2
01_01_0785 - 6076089-6077615 28 7.2
07_03_0626 + 20060013-20060273,20061017-20061274 27 9.5
07_03_0414 + 17892133-17893590 27 9.5
05_05_0226 + 23442971-23443857,23444209-23446324 27 9.5
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 213 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 115
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 424 SQAFIATLLFDPSMSALPIIAKQNSPS 344
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 107 ARICSLWSPESREALNNVTLLVASRTQNARRDVEA 3
AR C W PESR ++ V ++A+ ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 485 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 378
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -1
Query: 147 LNASKAEASLAEPGKDMLTVEPR-ESGGPKQCDLTSRVSHSKRETRRRSP 1
+ A AEA+L P E E+ GP + + SKR R+R P
Sbjct: 51 IEADPAEAALLPPAPSPQPAEAEAEAAGPASLPSSMQAEGSKRRVRKRDP 100
>06_03_0836 -
25249491-25249511,25249883-25250050,25250721-25250920,
25251000-25251324,25251981-25252045,25252231-25252552,
25252650-25252730
Length = 393
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -2
Query: 335 VHPSKGNVSWD*TVVRQVSFTLLMACRAIVILLSTRGTAVSDIWFMHS 192
V P K +VS +V Q SFT M +I LLS RGT S I + +
Sbjct: 303 VEPHKKHVS----IVSQNSFTKEMTAYSIHSLLSVRGTFCSQIGLLEA 346
>10_08_0774 + 20478203-20479393
Length = 396
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 53 SHCLGPPDSRGSTVSISLPGSARLASA 133
S+CL PPD+ G + ++ L SA+LA A
Sbjct: 197 SYCLAPPDT-GKSSALFLGASAKLAGA 222
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 126 ASLAEPGKDMLTVEPRESGGPKQCDLTSRVSHSKRETRR 10
A+ A GK + E E +QCDLT + +S RE +R
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKR 468
>01_01_0785 - 6076089-6077615
Length = 508
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 107 ARICSLWSPESREALNNVTLLVASRTQNARRDV 9
A + SLWSPES E + + TQ R+V
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREV 368
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 114 RLGWLRP*RRSGIIP 158
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>07_03_0414 + 17892133-17893590
Length = 485
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 297 GLIPAHVPF*WVNNPTL-GEFCFAMIGRADIEGSKSNVAMNAWLPQ 431
GL+ A PF WV P + G A + A KS + W PQ
Sbjct: 306 GLVAAGYPFLWVLRPDMVGASQSAALREAVAAAGKSKARVVEWAPQ 351
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 192 GRAAGGAKLPSAGLCLNASKAEASLAEPGKDMLTVEPRESGGPKQCDLTSRV 37
G+ G A S AS+ +AEP +++L++ G P+Q + S V
Sbjct: 165 GQLTGAAGTSSTAPSCRASRIPVGIAEPVEELLSMLDEVDGEPEQMRVISVV 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,903
Number of Sequences: 37544
Number of extensions: 383473
Number of successful extensions: 992
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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