Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0611
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = -1

Query: 246 NTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAEPGKDMLTVEPRESGG 67
           N+ + ++N   G    A   A  G  +P     L        L+E  K+   V P+   G
Sbjct: 151 NSEEAKKNSKKGKNGTARRSALKGVTIPPVAASLPCPPPPPPLSERKKN---VGPKPCVG 207

Query: 66  PKQCDLTSRVSHSKRETRR 10
           P Q +L+S+  HS +  R+
Sbjct: 208 PAQKNLSSQRKHSSKRNRK 226


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 138 RRSGIIPRMVASHHRPLGRVHEPNVRNCGS-SRTEQYYYRTT 260
           RR  + P + +   +P G +  P + +CGS   T  Y Y+ T
Sbjct: 164 RRRSVAPFLGSGGSQPTGMLISPELWHCGSEGSTRNYTYQAT 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,548
Number of Sequences: 27780
Number of extensions: 303462
Number of successful extensions: 688
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)